Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0143.Seq
         (754 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40333| Best HMM Match : No HMM Matches (HMM E-Value=.)             109   2e-24
SB_50703| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.1  
SB_19075| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.4  

>SB_40333| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 339

 Score =  109 bits (263), Expect = 2e-24
 Identities = 51/81 (62%), Positives = 63/81 (77%)
 Frame = +1

Query: 511 IRQNTEGEYAMLEHESVNGVVESMKVVTADNSERVARFAFEFAKKNGRKKVTTVHKANIM 690
           IR+ TEGEY  LEHESV GVVE +K++T   S+R+A+FAF++A K+ RKKVT VHKANIM
Sbjct: 119 IREQTEGEYTSLEHESVPGVVEMLKIITRRKSQRIAKFAFDYATKHNRKKVTCVHKANIM 178

Query: 691 KLSDGLFLETSRRLAKEYPDI 753
           K +DGLFL T   +AK YP I
Sbjct: 179 KKADGLFLNTCADVAKLYPKI 199



 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 16/30 (53%), Positives = 23/30 (76%)
 Frame = +3

Query: 162 AQYGGRHAVTMLPGGGIGPECMGYVRDIFK 251
           A +GGRH VT++PG G+GPE +  V+ +FK
Sbjct: 60  APFGGRHTVTLIPGDGVGPELVNCVKQMFK 89



 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 14/30 (46%), Positives = 25/30 (83%)
 Frame = +2

Query: 422 RNELDMYAYILNCKSYPGVATRHKDIDVVL 511
           + ELD++A +++C+S PG+ TRH +ID+V+
Sbjct: 89  KTELDLFANVVHCRSLPGIKTRHDNIDIVI 118


>SB_50703| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 166

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 12/30 (40%), Positives = 22/30 (73%)
 Frame = +3

Query: 639 QEKRQEEGDDGSQSQHHEVIRWLILGDVTS 728
           ++K++EE D  +++Q HE+I  L+  D+TS
Sbjct: 91  EDKQEEEEDIRAENQDHELIVPLLFHDLTS 120


>SB_19075| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6500

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
 Frame = +2

Query: 302  DNDDDVQYAITTIKRNGVGLKGNIETKSEAAYVTSRNVALRN---ELDMYAYILNCKSYP 472
            ++  D   +IT  KRN V  KGN   K  A  +  ++VA      E+DM A+++N +S  
Sbjct: 6095 ESSKDELESITGDKRNIVTDKGNKPPKDIADNIAKKSVAEMKPVPEVDM-AFVINARSTN 6153

Query: 473  GVATRHKDIDVV 508
              +   K  D V
Sbjct: 6154 SASNFEKMKDTV 6165


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,681,385
Number of Sequences: 59808
Number of extensions: 595155
Number of successful extensions: 1549
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1278
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1546
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2046258890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)