Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0143.Seq
         (754 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006610-5|AAK85453.1|  373|Caenorhabditis elegans Hypothetical ...   116   2e-26
Z81046-1|CAB02822.1|  379|Caenorhabditis elegans Hypothetical pr...   112   3e-25
Z46242-1|CAA86325.2|  396|Caenorhabditis elegans Hypothetical pr...   111   4e-25
Z79755-1|CAB02111.2|  358|Caenorhabditis elegans Hypothetical pr...   107   1e-23
AF068709-14|AAC19258.2|  312|Caenorhabditis elegans Serpentine r...    30   2.0  
AF025453-7|AAK31401.1|  253|Caenorhabditis elegans Hypothetical ...    30   2.0  
Z74033-9|CAN99687.1|  228|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z74033-8|CAA98470.1|  218|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z98877-17|CAB11571.1|  389|Caenorhabditis elegans Hypothetical p...    29   3.5  
AL021497-21|CAA16413.1|  389|Caenorhabditis elegans Hypothetical...    29   3.5  
AF273823-1|AAG15172.1|  388|Caenorhabditis elegans nuclear recep...    29   3.5  
AF273822-1|AAG15171.1|  387|Caenorhabditis elegans nuclear recep...    29   3.5  
AF273821-1|AAG15170.1|  383|Caenorhabditis elegans nuclear recep...    29   3.5  
Z80789-1|CAB02551.1|  708|Caenorhabditis elegans Hypothetical pr...    29   4.7  

>AC006610-5|AAK85453.1|  373|Caenorhabditis elegans Hypothetical
           protein C30F12.7 protein.
          Length = 373

 Score =  116 bits (278), Expect = 2e-26
 Identities = 52/81 (64%), Positives = 67/81 (82%)
 Frame = +1

Query: 511 IRQNTEGEYAMLEHESVNGVVESMKVVTADNSERVARFAFEFAKKNGRKKVTTVHKANIM 690
           IR+NTEGEY+ LEHE+V G+VES+K+VT +  ER++R AFE+AK NGRKKVT VHKANI 
Sbjct: 146 IRENTEGEYSGLEHEAVPGIVESIKIVTREKIERISRMAFEYAKANGRKKVTAVHKANIQ 205

Query: 691 KLSDGLFLETSRRLAKEYPDI 753
           KL DGLFL+  R ++++Y DI
Sbjct: 206 KLGDGLFLKVVRDMSEDYKDI 226



 Score = 86.2 bits (204), Expect = 2e-17
 Identities = 42/84 (50%), Positives = 57/84 (67%)
 Frame = +2

Query: 260 APIDFEVVDIDPTMDNDDDVQYAITTIKRNGVGLKGNIETKSEAAYVTSRNVALRNELDM 439
           AP++FE V +  ++  D D+  A+  I+RNGV +KGNIETK +     SRNV LR +LD+
Sbjct: 63  APVNFEEVQVSSSL-LDGDMDAAMLAIERNGVAIKGNIETKHDDPQFNSRNVELRTKLDL 121

Query: 440 YAYILNCKSYPGVATRHKDIDVVL 511
           YA IL+C + P V TRH  ID+VL
Sbjct: 122 YANILHCVTIPTVPTRHSGIDIVL 145



 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 19/34 (55%), Positives = 26/34 (76%)
 Frame = +3

Query: 153 IPKAQYGGRHAVTMLPGGGIGPECMGYVRDIFKY 254
           +P A+YGGRH V  LPG GIGPE + ++R+IF +
Sbjct: 27  LPLAKYGGRHTVCALPGDGIGPEMIAHIRNIFSF 60


>Z81046-1|CAB02822.1|  379|Caenorhabditis elegans Hypothetical
           protein C37E2.1 protein.
          Length = 379

 Score =  112 bits (269), Expect = 3e-25
 Identities = 50/81 (61%), Positives = 63/81 (77%)
 Frame = +1

Query: 511 IRQNTEGEYAMLEHESVNGVVESMKVVTADNSERVARFAFEFAKKNGRKKVTTVHKANIM 690
           +R+ TEGEY+ LEHE V GV+E +K+ T   +ER+A+FAF++A K GRKKVT VHKANIM
Sbjct: 160 VREQTEGEYSSLEHELVPGVIECLKISTRTKAERIAKFAFDYATKTGRKKVTAVHKANIM 219

Query: 691 KLSDGLFLETSRRLAKEYPDI 753
           KL DGLFL T   +AK+YP I
Sbjct: 220 KLGDGLFLRTCEGVAKQYPKI 240



 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 30/97 (30%), Positives = 53/97 (54%), Gaps = 7/97 (7%)
 Frame = +2

Query: 257 GAPIDFEVVDIDPT-MDNDDDVQYAITTIKRNG-VGLKGNIETKS---EAAYVTSRNVAL 421
           G PI+FE + +          ++ A+ +I RN  V LKG IE  +       +   N+ L
Sbjct: 69  GIPIEFEEIFLSEVHYTRSSSIENAVESIGRNNNVALKGAIEESAVLHTEGELQGLNMRL 128

Query: 422 RNELDMYAYILNCKSYPGVATRH-KDID-VVLSDRTQ 526
           R  LD++A +++ K+  G+ TRH K +D V++ ++T+
Sbjct: 129 RRSLDLFANVVHIKTLDGIKTRHGKQLDFVIVREQTE 165



 Score = 31.5 bits (68), Expect = 0.66
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +3

Query: 156 PKAQYGGRHAVTMLPGGGIGPECMGYVRDIFK 251
           P  +   +  VT++PG G+GPE +  V+DI K
Sbjct: 35  PPTELNQKLKVTIIPGDGVGPELIYTVQDIVK 66


>Z46242-1|CAA86325.2|  396|Caenorhabditis elegans Hypothetical
           protein F35G12.2 protein.
          Length = 396

 Score =  111 bits (268), Expect = 4e-25
 Identities = 57/86 (66%), Positives = 68/86 (79%), Gaps = 5/86 (5%)
 Frame = +1

Query: 511 IRQNTEGEYAMLEHESVNG----VVESMKVVTADNSERVARFAFEFAKKNGRKKVTTVHK 678
           IR+NTEGEY+  EHE+VN     VVES+KVVT + SE++ RFAF+FAKK GRKKVT VHK
Sbjct: 163 IRENTEGEYSGNEHEAVNAPHPRVVESLKVVTREKSEQITRFAFQFAKKYGRKKVTAVHK 222

Query: 679 ANIMKLSDGLFLETSRRLAK-EYPDI 753
           ANI KL DGLFL+ +  +AK EYPDI
Sbjct: 223 ANIQKLGDGLFLKVATDIAKAEYPDI 248



 Score = 93.5 bits (222), Expect = 1e-19
 Identities = 44/91 (48%), Positives = 62/91 (68%)
 Frame = +2

Query: 239 RHIQILGAPIDFEVVDIDPTMDNDDDVQYAITTIKRNGVGLKGNIETKSEAAYVTSRNVA 418
           R +  + AP+DFEVV++    D  +D+  AIT IKRNGV LKGNIETK +     SRN+ 
Sbjct: 72  RILSAVQAPVDFEVVNLTSKEDASEDLAEAITAIKRNGVALKGNIETKFDNPSFVSRNLE 131

Query: 419 LRNELDMYAYILNCKSYPGVATRHKDIDVVL 511
           LR +L++YA +L+C + P V +RH  ID+V+
Sbjct: 132 LRRQLNLYANVLHCSTIPTVPSRHTGIDMVI 162



 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 28/65 (43%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
 Frame = +3

Query: 54  VRGSVNLSSKAAPATLSDFDV-QHKTPVIRKQKLIPKAQYGGRHAVTMLPGGGIGPECMG 230
           +R S N+  KA  AT  + D+ + ++PV++       A+YGGRH VT+LPG GIGPE + 
Sbjct: 10  LRSSKNVVQKAFVATSPNSDMLRFRSPVLQTNTT-KLARYGGRHNVTVLPGDGIGPEMLH 68

Query: 231 YVRDI 245
           +V  I
Sbjct: 69  HVERI 73


>Z79755-1|CAB02111.2|  358|Caenorhabditis elegans Hypothetical
           protein F43G9.1 protein.
          Length = 358

 Score =  107 bits (256), Expect = 1e-23
 Identities = 51/81 (62%), Positives = 62/81 (76%)
 Frame = +1

Query: 511 IRQNTEGEYAMLEHESVNGVVESMKVVTADNSERVARFAFEFAKKNGRKKVTTVHKANIM 690
           IR+NTEGEY+ +EHE V GVV+S+K++T   S  VA FAFE+A++NGRK VT VHKANIM
Sbjct: 138 IRENTEGEYSGIEHEIVPGVVQSIKLITETASRNVASFAFEYARQNGRKVVTAVHKANIM 197

Query: 691 KLSDGLFLETSRRLAKEYPDI 753
           + SDGLFL   R  A  YPDI
Sbjct: 198 RQSDGLFLSICREQAALYPDI 218



 Score = 49.2 bits (112), Expect = 3e-06
 Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
 Frame = +2

Query: 260 APIDFEVVDIDPTMDNDDDVQY---AITTIKRNGVGLKGNIETKSEAAYVTSRNVALRNE 430
           API ++ VD+ P    D   +     I  +  N VGLKG +ET     +  S N+A+R E
Sbjct: 52  APIAWDPVDVTPVKGRDGVFRIPSRCIELMHANKVGLKGPLETPIGKGH-RSLNLAVRKE 110

Query: 431 LDMYAYILNCKSYPGVATRHKDIDVV 508
             +YA +  C+S  G  T + ++DVV
Sbjct: 111 FSLYANVRPCRSLEGHKTLYDNVDVV 136



 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +3

Query: 171 GGRHAVTMLPGGGIGPECMGYVRDIFK 251
           G    VT++PG GIGPE    V+ IF+
Sbjct: 22  GDVRRVTLIPGDGIGPEISASVQKIFE 48


>AF068709-14|AAC19258.2|  312|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 61 protein.
          Length = 312

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -1

Query: 160 LGISFCFLITGVLCWT 113
           + +++CFL  G+LCWT
Sbjct: 228 IALTYCFLYAGILCWT 243


>AF025453-7|AAK31401.1|  253|Caenorhabditis elegans Hypothetical
           protein C08F1.6 protein.
          Length = 253

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 46  CLXYAGL*ISARKQRPLHYRISMSST 123
           CL Y  + I   K+ P+HYR+S ++T
Sbjct: 124 CLAYISINICREKESPIHYRLSNTTT 149


>Z74033-9|CAN99687.1|  228|Caenorhabditis elegans Hypothetical
           protein F38B7.2b protein.
          Length = 228

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = -1

Query: 271 VNRSTEYLNMSRTYPMHSGPIPPPGSMVTA*RPPY 167
           V R T +  M  T P H  P PP  +  +A  PPY
Sbjct: 171 VERQTSFHIMDPTNPAHRSPPPPYNAQNSAIPPPY 205


>Z74033-8|CAA98470.1|  218|Caenorhabditis elegans Hypothetical
           protein F38B7.2a protein.
          Length = 218

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = -1

Query: 271 VNRSTEYLNMSRTYPMHSGPIPPPGSMVTA*RPPY 167
           V R T +  M  T P H  P PP  +  +A  PPY
Sbjct: 161 VERQTSFHIMDPTNPAHRSPPPPYNAQNSAIPPPY 195


>Z98877-17|CAB11571.1|  389|Caenorhabditis elegans Hypothetical
           protein Y51A2D.17 protein.
          Length = 389

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +2

Query: 410 NVALRNELDMYA-YILNCKSYPGVATRHKDIDVVL 511
           N+    E D+ A +ILN  SYPG A  HKD  ++L
Sbjct: 175 NIVSSKECDLVADWILN--SYPGFADLHKDQKIIL 207


>AL021497-21|CAA16413.1|  389|Caenorhabditis elegans Hypothetical
           protein Y51A2D.17 protein.
          Length = 389

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +2

Query: 410 NVALRNELDMYA-YILNCKSYPGVATRHKDIDVVL 511
           N+    E D+ A +ILN  SYPG A  HKD  ++L
Sbjct: 175 NIVSSKECDLVADWILN--SYPGFADLHKDQKIIL 207


>AF273823-1|AAG15172.1|  388|Caenorhabditis elegans nuclear receptor
           NHR-70 protein.
          Length = 388

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +2

Query: 410 NVALRNELDMYA-YILNCKSYPGVATRHKDIDVVL 511
           N+    E D+ A +ILN  SYPG A  HKD  ++L
Sbjct: 174 NIVSSKECDLVADWILN--SYPGFADLHKDQKIIL 206


>AF273822-1|AAG15171.1|  387|Caenorhabditis elegans nuclear receptor
           NHR-70 protein.
          Length = 387

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +2

Query: 410 NVALRNELDMYA-YILNCKSYPGVATRHKDIDVVL 511
           N+    E D+ A +ILN  SYPG A  HKD  ++L
Sbjct: 173 NIVSSKECDLVADWILN--SYPGFADLHKDQKIIL 205


>AF273821-1|AAG15170.1|  383|Caenorhabditis elegans nuclear receptor
           NHR-70 protein.
          Length = 383

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +2

Query: 410 NVALRNELDMYA-YILNCKSYPGVATRHKDIDVVL 511
           N+    E D+ A +ILN  SYPG A  HKD  ++L
Sbjct: 169 NIVSSKECDLVADWILN--SYPGFADLHKDQKIIL 201


>Z80789-1|CAB02551.1|  708|Caenorhabditis elegans Hypothetical
           protein F48C11.2 protein.
          Length = 708

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = -3

Query: 611 LSELSAVTTFIDSTTPFTDSCSNIAYSPS 525
           ++  S+ TTF+ +TTP + + SNI+ + S
Sbjct: 159 IANCSSTTTFLSTTTPVSSTTSNISLTSS 187


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,403,082
Number of Sequences: 27780
Number of extensions: 416665
Number of successful extensions: 1191
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1190
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)