Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0143.Seq
         (754 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    24   1.8  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      24   1.8  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    23   3.1  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    23   4.1  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    23   4.1  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     22   7.1  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    21   9.4  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +2

Query: 293 PTMDNDDDVQYAITTIKRNGVGLKGNIETKSEA 391
           P  D D++ +  +  + RNG G+ G +    EA
Sbjct: 354 PKKDEDEEEEEEVVVVGRNGAGV-GAMNANGEA 385


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 17/59 (28%), Positives = 24/59 (40%)
 Frame = -2

Query: 660 LLPAVFLGEFEGEPGHPL*VVSCHHFH*LDHTIHGFVFQHSVFTFCVLSDKTTSMSLCL 484
           L P    G  +G  G P  +++      L H +HG +    V   C +  KT S  L L
Sbjct: 333 LQPPDLAGTSQGSAGLPSAILAMR----LSHPLHGNLLPPGVCYTCDVCGKTLSTKLTL 387


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 8/21 (38%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
 Frame = +2

Query: 410 NVALRNELDM-YAYILNCKSY 469
           + +L N+ +  ++Y+LNCK+Y
Sbjct: 18  SASLENDNEFGFSYLLNCKNY 38


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 10/44 (22%), Positives = 20/44 (45%)
 Frame = +2

Query: 353 VGLKGNIETKSEAAYVTSRNVALRNELDMYAYILNCKSYPGVAT 484
           +G+   +  K     +  R +  +NE D   +++   S PGV +
Sbjct: 147 IGIVKTVAKKLHGTDIEMRILKTKNECDHVQFLITNTSGPGVVS 190


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 10/44 (22%), Positives = 20/44 (45%)
 Frame = +2

Query: 353 VGLKGNIETKSEAAYVTSRNVALRNELDMYAYILNCKSYPGVAT 484
           +G+   +  K     +  R +  +NE D   +++   S PGV +
Sbjct: 147 IGIVKTVAKKLHGTDIEMRILKTKNECDHVQFLITNTSGPGVVS 190


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +3

Query: 540 YVGTRIREWCGRV 578
           Y+ TR+  WC RV
Sbjct: 332 YMQTRVPAWCDRV 344


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +3

Query: 717 DVTSARQGVPGH 752
           D +  RQGVPGH
Sbjct: 53  DPSLLRQGVPGH 64


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,399
Number of Sequences: 438
Number of extensions: 4796
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23632110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)