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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0143.Seq
         (754 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g35260.1 68417.m05011 isocitrate dehydrogenase subunit 1 / NA...   120   1e-27
At2g17130.1 68415.m01977 isocitrate dehydrogenase subunit 2 / NA...   118   4e-27
At4g35650.1 68417.m05062 isocitrate dehydrogenase, putative / NA...   116   2e-26
At2g17130.2 68415.m01978 isocitrate dehydrogenase subunit 2 / NA...   108   3e-24
At5g03290.1 68418.m00279 isocitrate dehydrogenase, putative / NA...   104   7e-23
At3g09810.1 68416.m01169 isocitrate dehydrogenase, putative / NA...   103   1e-22
At1g32480.1 68414.m04008 isocitrate/isopropylmalate dehydrogenas...    83   1e-16
At5g14200.1 68418.m01659 3-isopropylmalate dehydrogenase, chloro...    42   4e-04
At1g80560.1 68414.m09445 3-isopropylmalate dehydrogenase, chloro...    42   6e-04
At1g31180.1 68414.m03817 3-isopropylmalate dehydrogenase, chloro...    40   0.001
At1g68890.1 68414.m07884 menaquinone biosynthesis protein-relate...    33   0.27 
At2g39930.1 68415.m04907 isoamylase, putative / starch debranchi...    31   1.1  
At2g27280.1 68415.m03278 hypothetical protein                          29   2.5  
At1g65580.1 68414.m07439 endonuclease/exonuclease/phosphatase fa...    29   4.4  
At3g18810.1 68416.m02389 protein kinase family protein contains ...    28   5.8  
At2g22890.1 68415.m02717 expressed protein  ; expression support...    28   5.8  
At1g80490.2 68414.m09430 WD-40 repeat family protein contains 9 ...    28   5.8  
At1g80490.1 68414.m09429 WD-40 repeat family protein contains 9 ...    28   5.8  
At1g29740.1 68414.m03636 leucine-rich repeat family protein / pr...    28   5.8  
At5g56110.1 68418.m07000 myb family transcription factor contain...    28   7.7  
At5g07760.1 68418.m00888 formin homology 2 domain-containing pro...    28   7.7  
At1g80480.1 68414.m09427 PRLI-interacting factor L, putative sim...    28   7.7  

>At4g35260.1 68417.m05011 isocitrate dehydrogenase subunit 1 / NAD+
           isocitrate dehydrogenase subunit 1 nearly identical to
           NAD+ dependent isocitrate dehydrogenase subunit 1
           [Arabidopsis thaliana] GI:1766046
          Length = 367

 Score =  120 bits (288), Expect = 1e-27
 Identities = 57/81 (70%), Positives = 68/81 (83%)
 Frame = +1

Query: 511 IRQNTEGEYAMLEHESVNGVVESMKVVTADNSERVARFAFEFAKKNGRKKVTTVHKANIM 690
           IR+NTEGEYA LEHE V GVVES+KV+T   SER+A++AFE+A  N RKKVT VHKANIM
Sbjct: 146 IRENTEGEYAGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYLNNRKKVTAVHKANIM 205

Query: 691 KLSDGLFLETSRRLAKEYPDI 753
           KL+DGLFLE+ R +AK+YP I
Sbjct: 206 KLADGLFLESCREVAKKYPSI 226



 Score = 62.5 bits (145), Expect = 3e-10
 Identities = 33/89 (37%), Positives = 55/89 (61%)
 Frame = +2

Query: 245 IQILGAPIDFEVVDIDPTMDNDDDVQYAITTIKRNGVGLKGNIETKSEAAYVTSRNVALR 424
           ++ + API FE  D+   M         + +I++N V LKG ++T      V+S NV LR
Sbjct: 60  MEAMHAPIFFEKYDVHGEMSRVPPE--VMESIRKNKVCLKGGLKTPVGGG-VSSLNVQLR 116

Query: 425 NELDMYAYILNCKSYPGVATRHKDIDVVL 511
            ELD++A ++NC + PG+ TRH+++D+V+
Sbjct: 117 KELDLFASLVNCFNLPGLPTRHENVDIVV 145



 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +3

Query: 138 RKQKLIPKAQYGGRHAVTMLPGGGIGPECMGYVRDIFK 251
           R    +P+   G   AVT++PG GIGP     V  + +
Sbjct: 24  RSVTYMPRPGDGAPRAVTLIPGDGIGPLVTNAVEQVME 61


>At2g17130.1 68415.m01977 isocitrate dehydrogenase subunit 2 / NAD+
           isocitrate dehydrogenase subunit 2 nearly identical to
           NAD+ dependent isocitrate dehydrogenase subunit 2
           [Arabidopsis thaliana] GI:1766048
          Length = 367

 Score =  118 bits (284), Expect = 4e-27
 Identities = 56/81 (69%), Positives = 68/81 (83%)
 Frame = +1

Query: 511 IRQNTEGEYAMLEHESVNGVVESMKVVTADNSERVARFAFEFAKKNGRKKVTTVHKANIM 690
           IR+NTEGEYA LEHE V GVVES+KV+T   SER+A++AFE+A  N RKKVT VHKANIM
Sbjct: 146 IRENTEGEYAGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYLNNRKKVTAVHKANIM 205

Query: 691 KLSDGLFLETSRRLAKEYPDI 753
           KL+DGLFLE+ + +AK+YP I
Sbjct: 206 KLADGLFLESCQEVAKKYPSI 226



 Score = 62.1 bits (144), Expect = 4e-10
 Identities = 32/89 (35%), Positives = 58/89 (65%)
 Frame = +2

Query: 245 IQILGAPIDFEVVDIDPTMDNDDDVQYAITTIKRNGVGLKGNIETKSEAAYVTSRNVALR 424
           ++ + AP+ FE  ++   M +  +    + +IK+N V LKG ++T      V+S NV LR
Sbjct: 60  MEAMHAPVYFEPFEVHGDMKSLPEG--LLESIKKNKVCLKGGLKTPVGGG-VSSLNVNLR 116

Query: 425 NELDMYAYILNCKSYPGVATRHKDIDVVL 511
            ELD++A ++NC + PG+A+RH+++D+V+
Sbjct: 117 KELDLFASLVNCFNLPGLASRHENVDIVV 145


>At4g35650.1 68417.m05062 isocitrate dehydrogenase, putative / NAD+
           isocitrate dehydrogenase, putative strong similarity to
           NAD+ dependent isocitrate dehydrogenase subunit 1
           [Arabidopsis thaliana] GI:1766046
          Length = 368

 Score =  116 bits (278), Expect = 2e-26
 Identities = 56/81 (69%), Positives = 66/81 (81%)
 Frame = +1

Query: 511 IRQNTEGEYAMLEHESVNGVVESMKVVTADNSERVARFAFEFAKKNGRKKVTTVHKANIM 690
           IR+NTEGEY+ LEHE V GVVES+KV+T   SER+AR+AFE+A  N RKKVT VHKANIM
Sbjct: 147 IRENTEGEYSGLEHEVVPGVVESLKVITKFCSERIARYAFEYAYLNNRKKVTAVHKANIM 206

Query: 691 KLSDGLFLETSRRLAKEYPDI 753
           KL+DGLFLE+ R +AK Y  I
Sbjct: 207 KLADGLFLESCREVAKHYSGI 227



 Score = 62.5 bits (145), Expect = 3e-10
 Identities = 34/97 (35%), Positives = 58/97 (59%)
 Frame = +2

Query: 221 VHGIRSRHIQILGAPIDFEVVDIDPTMDNDDDVQYAITTIKRNGVGLKGNIETKSEAAYV 400
           V G   + ++ + AP+ FE  ++   M    +    I ++KRN V LKG + T      V
Sbjct: 53  VTGAVEQVMEAMHAPVHFERYEVLGNMRKVPEE--VIESVKRNKVCLKGGLATPVGGG-V 109

Query: 401 TSRNVALRNELDMYAYILNCKSYPGVATRHKDIDVVL 511
           +S N+ LR ELD++A ++NC + PG+ TRH+++D+V+
Sbjct: 110 SSLNMQLRKELDIFASLVNCINVPGLVTRHENVDIVV 146



 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +3

Query: 126 TPVIRKQKLIPKAQYGGRHAVTMLPGGGIGPECMGYVRDIFK 251
           T + R    +P+   G    VT++PG GIGP   G V  + +
Sbjct: 21  TSLSRSITYMPRPGDGAPRTVTLIPGDGIGPLVTGAVEQVME 62


>At2g17130.2 68415.m01978 isocitrate dehydrogenase subunit 2 / NAD+
           isocitrate dehydrogenase subunit 2 nearly identical to
           NAD+ dependent isocitrate dehydrogenase subunit 2
           [Arabidopsis thaliana] GI:1766048
          Length = 363

 Score =  108 bits (260), Expect = 3e-24
 Identities = 54/81 (66%), Positives = 65/81 (80%)
 Frame = +1

Query: 511 IRQNTEGEYAMLEHESVNGVVESMKVVTADNSERVARFAFEFAKKNGRKKVTTVHKANIM 690
           IR+NTEGEYA LEHE V GVVES+K      SER+A++AFE+A  N RKKVT VHKANIM
Sbjct: 146 IRENTEGEYAGLEHEVVPGVVESLKFC----SERIAKYAFEYAYLNNRKKVTAVHKANIM 201

Query: 691 KLSDGLFLETSRRLAKEYPDI 753
           KL+DGLFLE+ + +AK+YP I
Sbjct: 202 KLADGLFLESCQEVAKKYPSI 222



 Score = 62.1 bits (144), Expect = 4e-10
 Identities = 32/89 (35%), Positives = 58/89 (65%)
 Frame = +2

Query: 245 IQILGAPIDFEVVDIDPTMDNDDDVQYAITTIKRNGVGLKGNIETKSEAAYVTSRNVALR 424
           ++ + AP+ FE  ++   M +  +    + +IK+N V LKG ++T      V+S NV LR
Sbjct: 60  MEAMHAPVYFEPFEVHGDMKSLPEG--LLESIKKNKVCLKGGLKTPVGGG-VSSLNVNLR 116

Query: 425 NELDMYAYILNCKSYPGVATRHKDIDVVL 511
            ELD++A ++NC + PG+A+RH+++D+V+
Sbjct: 117 KELDLFASLVNCFNLPGLASRHENVDIVV 145


>At5g03290.1 68418.m00279 isocitrate dehydrogenase, putative / NAD+
           isocitrate dehydrogenase, putative strong similarity to
           isocitrate dehydrogenase (NAD+) [Nicotiana tabacum]
           GI:3021506
          Length = 374

 Score =  104 bits (249), Expect = 7e-23
 Identities = 46/81 (56%), Positives = 66/81 (81%)
 Frame = +1

Query: 511 IRQNTEGEYAMLEHESVNGVVESMKVVTADNSERVARFAFEFAKKNGRKKVTTVHKANIM 690
           IR+NTEGEY+ LEH+ V GVVES+K++T   S RVA +AF +AK +GR++V+ +HKANIM
Sbjct: 157 IRENTEGEYSGLEHQVVRGVVESLKIITRQASLRVAEYAFLYAKTHGRERVSAIHKANIM 216

Query: 691 KLSDGLFLETSRRLAKEYPDI 753
           + +DGLFL+  R +A++YP+I
Sbjct: 217 QKTDGLFLKCCREVAEKYPEI 237



 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 31/88 (35%), Positives = 51/88 (57%), Gaps = 4/88 (4%)
 Frame = +2

Query: 257 GAPIDFEV----VDIDPTMDNDDDVQYAITTIKRNGVGLKGNIETKSEAAYVTSRNVALR 424
           G PI++E      +IDP   +    + ++ +++RN VGLKG + T     +  S N+ LR
Sbjct: 70  GVPIEWEEHYVGTEIDPRTQSFLTWE-SLESVRRNKVGLKGPMATPIGKGH-RSLNLTLR 127

Query: 425 NELDMYAYILNCKSYPGVATRHKDIDVV 508
            EL++YA +  C S PG  TR+ D+D++
Sbjct: 128 KELNLYANVRPCYSLPGYKTRYDDVDLI 155


>At3g09810.1 68416.m01169 isocitrate dehydrogenase, putative / NAD+
           isocitrate dehydrogenase, putative strong similarity to
           isocitrate dehydrogenase (NAD+) GB:CAA65502 GI:3021506
           [Nicotiana tabacum]
          Length = 374

 Score =  103 bits (248), Expect = 1e-22
 Identities = 47/81 (58%), Positives = 64/81 (79%)
 Frame = +1

Query: 511 IRQNTEGEYAMLEHESVNGVVESMKVVTADNSERVARFAFEFAKKNGRKKVTTVHKANIM 690
           IR+NTEGEY+ LEH+ V GVVES+K++T   S RVA +AF +AK +GRKKV+ +HKANIM
Sbjct: 157 IRENTEGEYSGLEHQVVKGVVESLKIITRKASMRVAEYAFLYAKTHGRKKVSAIHKANIM 216

Query: 691 KLSDGLFLETSRRLAKEYPDI 753
           + +DGLFL+    +A +YP+I
Sbjct: 217 QKTDGLFLQCCDEVAAKYPEI 237



 Score = 48.4 bits (110), Expect = 5e-06
 Identities = 23/60 (38%), Positives = 37/60 (61%)
 Frame = +2

Query: 329 ITTIKRNGVGLKGNIETKSEAAYVTSRNVALRNELDMYAYILNCKSYPGVATRHKDIDVV 508
           + ++ +N VGLKG + T     +  S N+ LR EL++YA +  C S PG  TR+ D+D++
Sbjct: 97  LQSVLKNKVGLKGPMATPIGKGH-RSLNLTLRKELNLYANVRPCYSLPGYKTRYDDVDLI 155


>At1g32480.1 68414.m04008 isocitrate/isopropylmalate dehydrogenase
           family protein similar to NAD+ dependent isocitrate
           dehydrogenase subunit 2 [Arabidopsis thaliana]
           GI:1766048; contains Pfam profile PF00180 dehydrogenase,
           isocitrate/isopropylmalate family
          Length = 294

 Score = 83.4 bits (197), Expect = 1e-16
 Identities = 44/83 (53%), Positives = 59/83 (71%), Gaps = 2/83 (2%)
 Frame = +1

Query: 511 IRQNTEGEYAMLEHESVNGVVESMKV-VTADNSERVARFAFEFAKKNGRKKVTTVH-KAN 684
           IR+NTEGEYA  EHE V GV+ES +V +T   S+R+A++AFE+A  + RKKVT VH    
Sbjct: 100 IRENTEGEYAGREHEVVPGVIESFQVTMTKFWSDRIAKYAFEYAHFSKRKKVTAVHNNGK 159

Query: 685 IMKLSDGLFLETSRRLAKEYPDI 753
             KL+D  FLE+ + +AK YP+I
Sbjct: 160 YEKLADAFFLESCQEVAKMYPNI 182



 Score = 32.7 bits (71), Expect = 0.27
 Identities = 11/30 (36%), Positives = 23/30 (76%)
 Frame = +2

Query: 422 RNELDMYAYILNCKSYPGVATRHKDIDVVL 511
           R ELD++A +++C +  G  +RH+++D+V+
Sbjct: 70  RKELDLFASLVDCFNLNGQPSRHENVDIVV 99


>At5g14200.1 68418.m01659 3-isopropylmalate dehydrogenase,
           chloroplast, putative strong similarity to SP|P29102
           3-isopropylmalate dehydrogenase, chloroplast precursor
           {Brassica napus}
          Length = 409

 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 26/68 (38%), Positives = 40/68 (58%)
 Frame = +1

Query: 550 HESVNGVVESMKVVTADNSERVARFAFEFAKKNGRKKVTTVHKANIMKLSDGLFLETSRR 729
           +E+   V  S ++  A   +R+AR AFE A+K  R K+ +V KAN++  S  L+ +    
Sbjct: 195 NENGEEVGVSTEIYAAHEIDRIARVAFETARKR-RGKLCSVDKANVLDASI-LWRKRVTA 252

Query: 730 LAKEYPDI 753
           LA EYPD+
Sbjct: 253 LASEYPDV 260



 Score = 28.3 bits (60), Expect = 5.8
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +3

Query: 177 RHAVTMLPGGGIGPECMGYVRDIFK 251
           R+ + +LPG GIGPE +   +++ +
Sbjct: 46  RYNIALLPGDGIGPEVISVAKNVLQ 70


>At1g80560.1 68414.m09445 3-isopropylmalate dehydrogenase,
           chloroplast, putative strong similarity to
           3-ISOPROPYLMALATE DEHYDROGENASE PRECURSOR GB:P29102
           SP|P29102 from [Brassica napus]
          Length = 405

 Score = 41.5 bits (93), Expect = 6e-04
 Identities = 24/57 (42%), Positives = 36/57 (63%)
 Frame = +1

Query: 583 KVVTADNSERVARFAFEFAKKNGRKKVTTVHKANIMKLSDGLFLETSRRLAKEYPDI 753
           +V  A   +R+AR AFE A+K  R K+ +V KAN+++ S  L+ +    LA EYPD+
Sbjct: 202 EVYAAHEIDRIARVAFETARKR-RGKLCSVDKANVLEASI-LWRKRVTALASEYPDV 256



 Score = 31.5 bits (68), Expect = 0.62
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = +3

Query: 69  NLSSKAAPATLSDFDVQHKTPV-IRKQKLIPKAQYGGRHAVTMLPGGGIGPECMGYVRDI 245
           N+ +   PAT      Q   P  +R     P  +   R+ +T+LPG GIGPE +   +++
Sbjct: 8   NIRTVKVPATFRAVSKQSLAPFRVRCAVASPGKK---RYTITLLPGDGIGPEVVSIAKNV 64

Query: 246 FK 251
            +
Sbjct: 65  LQ 66


>At1g31180.1 68414.m03817 3-isopropylmalate dehydrogenase,
           chloroplast, putative strong similarity to SP|P29102
           3-isopropylmalate dehydrogenase, chloroplast precursor
           {Brassica napus}; EST gb|F14478 comes from this gene
          Length = 404

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 23/57 (40%), Positives = 35/57 (61%)
 Frame = +1

Query: 583 KVVTADNSERVARFAFEFAKKNGRKKVTTVHKANIMKLSDGLFLETSRRLAKEYPDI 753
           ++  A   +R+AR AFE A+K  R K+ +V KAN++  S  L+ +    LA EYPD+
Sbjct: 203 EIYAAHEIDRIARVAFETARKR-RGKLCSVDKANVLDASI-LWRKRVTALASEYPDV 257



 Score = 30.3 bits (65), Expect = 1.4
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +3

Query: 177 RHAVTMLPGGGIGPECMGYVRDIFK 251
           R+ +T+LPG GIGPE +   +++ +
Sbjct: 43  RYNITLLPGDGIGPEVISVAKNVLQ 67


>At1g68890.1 68414.m07884 menaquinone biosynthesis protein-related
           similar to menaquinone biosynthesis protein menD
           [SP|P17109][E. coli] ; Pfam HMM hit:
           2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic
           acid synthase / 2-oxoglutarate decarboxylase
          Length = 894

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
 Frame = +2

Query: 164 AIRRSSRGDHAPWRRYRS*VHGIRSRHIQIL-GAPIDFEVVDIDPTMDNDDDVQYAITTI 340
           +IRRS      P     S +HGIR R+I++  G   D  ++D D  +D+D  VQ  +T  
Sbjct: 25  SIRRSRERFSFPESLRVSLLHGIR-RNIEVAQGVQFDGPIMDRDVNLDDDLVVQVCVTRT 83

Query: 341 KRNGVGLKGNIETKSEA 391
               + L+  +E+  EA
Sbjct: 84  LPPALTLELGLESLKEA 100


>At2g39930.1 68415.m04907 isoamylase, putative / starch debranching
           enzyme, putative similar to isoamylase from [Solanum
           tuberosum] GI:27728145, [Triticum aestivum] GI:17932898,
           [Hordeum vulgare] GI:21314275, [Oryza sativa]
           GI:3252794; contains Pfam profiles PF00128: Alpha
           amylase catalytic domain, PF02922: Isoamylase N-terminal
           domain
          Length = 783

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +3

Query: 111 DVQHKTPVIRKQKLIPKA-QYGGRHAVTMLPGGGIGPECMGYVRDIFK 251
           D+    P++R  KLI +A   GG + V M P  GI  E  G  RD+ +
Sbjct: 450 DMISNDPILRGVKLIAEAWDAGGLYQVGMFPHWGIWSEWNGKFRDVVR 497


>At2g27280.1 68415.m03278 hypothetical protein 
          Length = 427

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = -3

Query: 254 VFEYVANVSHALRTDTASREHGHRVTTAVLRLR 156
           V +++   S+ LR DTA +E    VTTA  RLR
Sbjct: 27  VLDFIGKESNFLRKDTAEKEITDAVTTAKERLR 59


>At1g65580.1 68414.m07439 endonuclease/exonuclease/phosphatase
           family protein similar to inositol polyphosphate
           5-phosphatase II isoform (GI:15418718) [Mus musculus];
           contains 6 (5 weak) Pfam: Pf00400 WD domain, G-beta
           repeats and Pfam PF03372:
           Endonuclease/Exonuclease/phosphatase family
          Length = 1101

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -3

Query: 581 IDSTTPFTDSCSNIAYSPSVFCLIKQHQCPYVWS-QRQGKI 462
           ++ T P+ +S  N   S +V C+I       VWS  R G+I
Sbjct: 166 VEDTAPYKESLGNEFGSAAVVCMIGDEGSRVVWSGHRDGRI 206


>At3g18810.1 68416.m02389 protein kinase family protein contains
           Pfam PF00069: Protein kinase domain
          Length = 700

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 8/41 (19%)
 Frame = -1

Query: 268 NRSTEYLNMSRTYP--------MHSGPIPPPGSMVTA*RPP 170
           N+S   +N+S+ YP        M+S P PPPGS   +  PP
Sbjct: 242 NQSDHVMNLSQQYPGSNGNNNWMNSPPPPPPGSWQPSPPPP 282


>At2g22890.1 68415.m02717 expressed protein  ; expression supported
           by MPSS
          Length = 279

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = -2

Query: 573 DHTIHGFVFQHSVFTFCVL 517
           DH +HGFV   S+F FCVL
Sbjct: 176 DHVVHGFV---SMFAFCVL 191


>At1g80490.2 68414.m09430 WD-40 repeat family protein contains 9
           WD-40 repeats domain (PF00400) (6 weak)
          Length = 1120

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -2

Query: 366 PFSPTPFLLMVVIAYWTSSSLSIV-GSMSTTSKSIGAPSI 250
           PF PTP  +   +A W SS  S+   ++S    ++GAPSI
Sbjct: 238 PFQPTPSPVPTPLAGWMSSPSSVPHPAVSGGPIALGAPSI 277


>At1g80490.1 68414.m09429 WD-40 repeat family protein contains 9
           WD-40 repeats domain (PF00400) (6 weak)
          Length = 1120

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -2

Query: 366 PFSPTPFLLMVVIAYWTSSSLSIV-GSMSTTSKSIGAPSI 250
           PF PTP  +   +A W SS  S+   ++S    ++GAPSI
Sbjct: 238 PFQPTPSPVPTPLAGWMSSPSSVPHPAVSGGPIALGAPSI 277


>At1g29740.1 68414.m03636 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 1049

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
 Frame = -1

Query: 163 ALGISFCFLITGVLCW---TSKSDNVAGAAFELRFTDPRTSDKTFNLVNK 23
           AL +S  FLI G L W    S +D     +F LR     T D  FN +NK
Sbjct: 606 ALIVSLSFLILGALYWRICVSNADGEKRGSFSLRQLKVATDD--FNPLNK 653


>At5g56110.1 68418.m07000 myb family transcription factor contains
           PFAM profile: Myb DNA binding domain PF00249
          Length = 320

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -2

Query: 234 RIPCTQDRYRLQGAWSPRDDRRIA 163
           RIPC +     +G W+P +D ++A
Sbjct: 3   RIPCCEKENVKRGQWTPEEDNKLA 26


>At5g07760.1 68418.m00888 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02181
          Length = 853

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = -1

Query: 214 PIPPPGSMVTA*RPPYCAL-GISFCF 140
           P+PPP  +     PP CAL GI  CF
Sbjct: 99  PLPPPPLIFVGAPPPTCALKGIVCCF 124


>At1g80480.1 68414.m09427 PRLI-interacting factor L, putative
           similar to PRLI-interacting factor L [Arabidopsis
           thaliana] GI:11139268; contains Pfam profile PF02492:
           Cobalamin synthesis protein/P47K
          Length = 444

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -3

Query: 620 LATLSELSAVTTFIDSTTPFTDSCSNIAYSPSVFCLIKQ 504
           +ATLS L   TTF+  T P + +  N  +S +   ++ +
Sbjct: 1   MATLSTLEIATTFLSFTAPRSSAAFNYRFSSAAVSVLSR 39


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,414,102
Number of Sequences: 28952
Number of extensions: 383367
Number of successful extensions: 1217
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1210
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1672953192
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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