BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= pg--0143.Seq (754 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At4g35260.1 68417.m05011 isocitrate dehydrogenase subunit 1 / NA... 120 1e-27 At2g17130.1 68415.m01977 isocitrate dehydrogenase subunit 2 / NA... 118 4e-27 At4g35650.1 68417.m05062 isocitrate dehydrogenase, putative / NA... 116 2e-26 At2g17130.2 68415.m01978 isocitrate dehydrogenase subunit 2 / NA... 108 3e-24 At5g03290.1 68418.m00279 isocitrate dehydrogenase, putative / NA... 104 7e-23 At3g09810.1 68416.m01169 isocitrate dehydrogenase, putative / NA... 103 1e-22 At1g32480.1 68414.m04008 isocitrate/isopropylmalate dehydrogenas... 83 1e-16 At5g14200.1 68418.m01659 3-isopropylmalate dehydrogenase, chloro... 42 4e-04 At1g80560.1 68414.m09445 3-isopropylmalate dehydrogenase, chloro... 42 6e-04 At1g31180.1 68414.m03817 3-isopropylmalate dehydrogenase, chloro... 40 0.001 At1g68890.1 68414.m07884 menaquinone biosynthesis protein-relate... 33 0.27 At2g39930.1 68415.m04907 isoamylase, putative / starch debranchi... 31 1.1 At2g27280.1 68415.m03278 hypothetical protein 29 2.5 At1g65580.1 68414.m07439 endonuclease/exonuclease/phosphatase fa... 29 4.4 At3g18810.1 68416.m02389 protein kinase family protein contains ... 28 5.8 At2g22890.1 68415.m02717 expressed protein ; expression support... 28 5.8 At1g80490.2 68414.m09430 WD-40 repeat family protein contains 9 ... 28 5.8 At1g80490.1 68414.m09429 WD-40 repeat family protein contains 9 ... 28 5.8 At1g29740.1 68414.m03636 leucine-rich repeat family protein / pr... 28 5.8 At5g56110.1 68418.m07000 myb family transcription factor contain... 28 7.7 At5g07760.1 68418.m00888 formin homology 2 domain-containing pro... 28 7.7 At1g80480.1 68414.m09427 PRLI-interacting factor L, putative sim... 28 7.7 >At4g35260.1 68417.m05011 isocitrate dehydrogenase subunit 1 / NAD+ isocitrate dehydrogenase subunit 1 nearly identical to NAD+ dependent isocitrate dehydrogenase subunit 1 [Arabidopsis thaliana] GI:1766046 Length = 367 Score = 120 bits (288), Expect = 1e-27 Identities = 57/81 (70%), Positives = 68/81 (83%) Frame = +1 Query: 511 IRQNTEGEYAMLEHESVNGVVESMKVVTADNSERVARFAFEFAKKNGRKKVTTVHKANIM 690 IR+NTEGEYA LEHE V GVVES+KV+T SER+A++AFE+A N RKKVT VHKANIM Sbjct: 146 IRENTEGEYAGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYLNNRKKVTAVHKANIM 205 Query: 691 KLSDGLFLETSRRLAKEYPDI 753 KL+DGLFLE+ R +AK+YP I Sbjct: 206 KLADGLFLESCREVAKKYPSI 226 Score = 62.5 bits (145), Expect = 3e-10 Identities = 33/89 (37%), Positives = 55/89 (61%) Frame = +2 Query: 245 IQILGAPIDFEVVDIDPTMDNDDDVQYAITTIKRNGVGLKGNIETKSEAAYVTSRNVALR 424 ++ + API FE D+ M + +I++N V LKG ++T V+S NV LR Sbjct: 60 MEAMHAPIFFEKYDVHGEMSRVPPE--VMESIRKNKVCLKGGLKTPVGGG-VSSLNVQLR 116 Query: 425 NELDMYAYILNCKSYPGVATRHKDIDVVL 511 ELD++A ++NC + PG+ TRH+++D+V+ Sbjct: 117 KELDLFASLVNCFNLPGLPTRHENVDIVV 145 Score = 29.1 bits (62), Expect = 3.3 Identities = 13/38 (34%), Positives = 19/38 (50%) Frame = +3 Query: 138 RKQKLIPKAQYGGRHAVTMLPGGGIGPECMGYVRDIFK 251 R +P+ G AVT++PG GIGP V + + Sbjct: 24 RSVTYMPRPGDGAPRAVTLIPGDGIGPLVTNAVEQVME 61 >At2g17130.1 68415.m01977 isocitrate dehydrogenase subunit 2 / NAD+ isocitrate dehydrogenase subunit 2 nearly identical to NAD+ dependent isocitrate dehydrogenase subunit 2 [Arabidopsis thaliana] GI:1766048 Length = 367 Score = 118 bits (284), Expect = 4e-27 Identities = 56/81 (69%), Positives = 68/81 (83%) Frame = +1 Query: 511 IRQNTEGEYAMLEHESVNGVVESMKVVTADNSERVARFAFEFAKKNGRKKVTTVHKANIM 690 IR+NTEGEYA LEHE V GVVES+KV+T SER+A++AFE+A N RKKVT VHKANIM Sbjct: 146 IRENTEGEYAGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYLNNRKKVTAVHKANIM 205 Query: 691 KLSDGLFLETSRRLAKEYPDI 753 KL+DGLFLE+ + +AK+YP I Sbjct: 206 KLADGLFLESCQEVAKKYPSI 226 Score = 62.1 bits (144), Expect = 4e-10 Identities = 32/89 (35%), Positives = 58/89 (65%) Frame = +2 Query: 245 IQILGAPIDFEVVDIDPTMDNDDDVQYAITTIKRNGVGLKGNIETKSEAAYVTSRNVALR 424 ++ + AP+ FE ++ M + + + +IK+N V LKG ++T V+S NV LR Sbjct: 60 MEAMHAPVYFEPFEVHGDMKSLPEG--LLESIKKNKVCLKGGLKTPVGGG-VSSLNVNLR 116 Query: 425 NELDMYAYILNCKSYPGVATRHKDIDVVL 511 ELD++A ++NC + PG+A+RH+++D+V+ Sbjct: 117 KELDLFASLVNCFNLPGLASRHENVDIVV 145 >At4g35650.1 68417.m05062 isocitrate dehydrogenase, putative / NAD+ isocitrate dehydrogenase, putative strong similarity to NAD+ dependent isocitrate dehydrogenase subunit 1 [Arabidopsis thaliana] GI:1766046 Length = 368 Score = 116 bits (278), Expect = 2e-26 Identities = 56/81 (69%), Positives = 66/81 (81%) Frame = +1 Query: 511 IRQNTEGEYAMLEHESVNGVVESMKVVTADNSERVARFAFEFAKKNGRKKVTTVHKANIM 690 IR+NTEGEY+ LEHE V GVVES+KV+T SER+AR+AFE+A N RKKVT VHKANIM Sbjct: 147 IRENTEGEYSGLEHEVVPGVVESLKVITKFCSERIARYAFEYAYLNNRKKVTAVHKANIM 206 Query: 691 KLSDGLFLETSRRLAKEYPDI 753 KL+DGLFLE+ R +AK Y I Sbjct: 207 KLADGLFLESCREVAKHYSGI 227 Score = 62.5 bits (145), Expect = 3e-10 Identities = 34/97 (35%), Positives = 58/97 (59%) Frame = +2 Query: 221 VHGIRSRHIQILGAPIDFEVVDIDPTMDNDDDVQYAITTIKRNGVGLKGNIETKSEAAYV 400 V G + ++ + AP+ FE ++ M + I ++KRN V LKG + T V Sbjct: 53 VTGAVEQVMEAMHAPVHFERYEVLGNMRKVPEE--VIESVKRNKVCLKGGLATPVGGG-V 109 Query: 401 TSRNVALRNELDMYAYILNCKSYPGVATRHKDIDVVL 511 +S N+ LR ELD++A ++NC + PG+ TRH+++D+V+ Sbjct: 110 SSLNMQLRKELDIFASLVNCINVPGLVTRHENVDIVV 146 Score = 30.7 bits (66), Expect = 1.1 Identities = 14/42 (33%), Positives = 21/42 (50%) Frame = +3 Query: 126 TPVIRKQKLIPKAQYGGRHAVTMLPGGGIGPECMGYVRDIFK 251 T + R +P+ G VT++PG GIGP G V + + Sbjct: 21 TSLSRSITYMPRPGDGAPRTVTLIPGDGIGPLVTGAVEQVME 62 >At2g17130.2 68415.m01978 isocitrate dehydrogenase subunit 2 / NAD+ isocitrate dehydrogenase subunit 2 nearly identical to NAD+ dependent isocitrate dehydrogenase subunit 2 [Arabidopsis thaliana] GI:1766048 Length = 363 Score = 108 bits (260), Expect = 3e-24 Identities = 54/81 (66%), Positives = 65/81 (80%) Frame = +1 Query: 511 IRQNTEGEYAMLEHESVNGVVESMKVVTADNSERVARFAFEFAKKNGRKKVTTVHKANIM 690 IR+NTEGEYA LEHE V GVVES+K SER+A++AFE+A N RKKVT VHKANIM Sbjct: 146 IRENTEGEYAGLEHEVVPGVVESLKFC----SERIAKYAFEYAYLNNRKKVTAVHKANIM 201 Query: 691 KLSDGLFLETSRRLAKEYPDI 753 KL+DGLFLE+ + +AK+YP I Sbjct: 202 KLADGLFLESCQEVAKKYPSI 222 Score = 62.1 bits (144), Expect = 4e-10 Identities = 32/89 (35%), Positives = 58/89 (65%) Frame = +2 Query: 245 IQILGAPIDFEVVDIDPTMDNDDDVQYAITTIKRNGVGLKGNIETKSEAAYVTSRNVALR 424 ++ + AP+ FE ++ M + + + +IK+N V LKG ++T V+S NV LR Sbjct: 60 MEAMHAPVYFEPFEVHGDMKSLPEG--LLESIKKNKVCLKGGLKTPVGGG-VSSLNVNLR 116 Query: 425 NELDMYAYILNCKSYPGVATRHKDIDVVL 511 ELD++A ++NC + PG+A+RH+++D+V+ Sbjct: 117 KELDLFASLVNCFNLPGLASRHENVDIVV 145 >At5g03290.1 68418.m00279 isocitrate dehydrogenase, putative / NAD+ isocitrate dehydrogenase, putative strong similarity to isocitrate dehydrogenase (NAD+) [Nicotiana tabacum] GI:3021506 Length = 374 Score = 104 bits (249), Expect = 7e-23 Identities = 46/81 (56%), Positives = 66/81 (81%) Frame = +1 Query: 511 IRQNTEGEYAMLEHESVNGVVESMKVVTADNSERVARFAFEFAKKNGRKKVTTVHKANIM 690 IR+NTEGEY+ LEH+ V GVVES+K++T S RVA +AF +AK +GR++V+ +HKANIM Sbjct: 157 IRENTEGEYSGLEHQVVRGVVESLKIITRQASLRVAEYAFLYAKTHGRERVSAIHKANIM 216 Query: 691 KLSDGLFLETSRRLAKEYPDI 753 + +DGLFL+ R +A++YP+I Sbjct: 217 QKTDGLFLKCCREVAEKYPEI 237 Score = 53.2 bits (122), Expect = 2e-07 Identities = 31/88 (35%), Positives = 51/88 (57%), Gaps = 4/88 (4%) Frame = +2 Query: 257 GAPIDFEV----VDIDPTMDNDDDVQYAITTIKRNGVGLKGNIETKSEAAYVTSRNVALR 424 G PI++E +IDP + + ++ +++RN VGLKG + T + S N+ LR Sbjct: 70 GVPIEWEEHYVGTEIDPRTQSFLTWE-SLESVRRNKVGLKGPMATPIGKGH-RSLNLTLR 127 Query: 425 NELDMYAYILNCKSYPGVATRHKDIDVV 508 EL++YA + C S PG TR+ D+D++ Sbjct: 128 KELNLYANVRPCYSLPGYKTRYDDVDLI 155 >At3g09810.1 68416.m01169 isocitrate dehydrogenase, putative / NAD+ isocitrate dehydrogenase, putative strong similarity to isocitrate dehydrogenase (NAD+) GB:CAA65502 GI:3021506 [Nicotiana tabacum] Length = 374 Score = 103 bits (248), Expect = 1e-22 Identities = 47/81 (58%), Positives = 64/81 (79%) Frame = +1 Query: 511 IRQNTEGEYAMLEHESVNGVVESMKVVTADNSERVARFAFEFAKKNGRKKVTTVHKANIM 690 IR+NTEGEY+ LEH+ V GVVES+K++T S RVA +AF +AK +GRKKV+ +HKANIM Sbjct: 157 IRENTEGEYSGLEHQVVKGVVESLKIITRKASMRVAEYAFLYAKTHGRKKVSAIHKANIM 216 Query: 691 KLSDGLFLETSRRLAKEYPDI 753 + +DGLFL+ +A +YP+I Sbjct: 217 QKTDGLFLQCCDEVAAKYPEI 237 Score = 48.4 bits (110), Expect = 5e-06 Identities = 23/60 (38%), Positives = 37/60 (61%) Frame = +2 Query: 329 ITTIKRNGVGLKGNIETKSEAAYVTSRNVALRNELDMYAYILNCKSYPGVATRHKDIDVV 508 + ++ +N VGLKG + T + S N+ LR EL++YA + C S PG TR+ D+D++ Sbjct: 97 LQSVLKNKVGLKGPMATPIGKGH-RSLNLTLRKELNLYANVRPCYSLPGYKTRYDDVDLI 155 >At1g32480.1 68414.m04008 isocitrate/isopropylmalate dehydrogenase family protein similar to NAD+ dependent isocitrate dehydrogenase subunit 2 [Arabidopsis thaliana] GI:1766048; contains Pfam profile PF00180 dehydrogenase, isocitrate/isopropylmalate family Length = 294 Score = 83.4 bits (197), Expect = 1e-16 Identities = 44/83 (53%), Positives = 59/83 (71%), Gaps = 2/83 (2%) Frame = +1 Query: 511 IRQNTEGEYAMLEHESVNGVVESMKV-VTADNSERVARFAFEFAKKNGRKKVTTVH-KAN 684 IR+NTEGEYA EHE V GV+ES +V +T S+R+A++AFE+A + RKKVT VH Sbjct: 100 IRENTEGEYAGREHEVVPGVIESFQVTMTKFWSDRIAKYAFEYAHFSKRKKVTAVHNNGK 159 Query: 685 IMKLSDGLFLETSRRLAKEYPDI 753 KL+D FLE+ + +AK YP+I Sbjct: 160 YEKLADAFFLESCQEVAKMYPNI 182 Score = 32.7 bits (71), Expect = 0.27 Identities = 11/30 (36%), Positives = 23/30 (76%) Frame = +2 Query: 422 RNELDMYAYILNCKSYPGVATRHKDIDVVL 511 R ELD++A +++C + G +RH+++D+V+ Sbjct: 70 RKELDLFASLVDCFNLNGQPSRHENVDIVV 99 >At5g14200.1 68418.m01659 3-isopropylmalate dehydrogenase, chloroplast, putative strong similarity to SP|P29102 3-isopropylmalate dehydrogenase, chloroplast precursor {Brassica napus} Length = 409 Score = 41.9 bits (94), Expect = 4e-04 Identities = 26/68 (38%), Positives = 40/68 (58%) Frame = +1 Query: 550 HESVNGVVESMKVVTADNSERVARFAFEFAKKNGRKKVTTVHKANIMKLSDGLFLETSRR 729 +E+ V S ++ A +R+AR AFE A+K R K+ +V KAN++ S L+ + Sbjct: 195 NENGEEVGVSTEIYAAHEIDRIARVAFETARKR-RGKLCSVDKANVLDASI-LWRKRVTA 252 Query: 730 LAKEYPDI 753 LA EYPD+ Sbjct: 253 LASEYPDV 260 Score = 28.3 bits (60), Expect = 5.8 Identities = 9/25 (36%), Positives = 17/25 (68%) Frame = +3 Query: 177 RHAVTMLPGGGIGPECMGYVRDIFK 251 R+ + +LPG GIGPE + +++ + Sbjct: 46 RYNIALLPGDGIGPEVISVAKNVLQ 70 >At1g80560.1 68414.m09445 3-isopropylmalate dehydrogenase, chloroplast, putative strong similarity to 3-ISOPROPYLMALATE DEHYDROGENASE PRECURSOR GB:P29102 SP|P29102 from [Brassica napus] Length = 405 Score = 41.5 bits (93), Expect = 6e-04 Identities = 24/57 (42%), Positives = 36/57 (63%) Frame = +1 Query: 583 KVVTADNSERVARFAFEFAKKNGRKKVTTVHKANIMKLSDGLFLETSRRLAKEYPDI 753 +V A +R+AR AFE A+K R K+ +V KAN+++ S L+ + LA EYPD+ Sbjct: 202 EVYAAHEIDRIARVAFETARKR-RGKLCSVDKANVLEASI-LWRKRVTALASEYPDV 256 Score = 31.5 bits (68), Expect = 0.62 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 1/62 (1%) Frame = +3 Query: 69 NLSSKAAPATLSDFDVQHKTPV-IRKQKLIPKAQYGGRHAVTMLPGGGIGPECMGYVRDI 245 N+ + PAT Q P +R P + R+ +T+LPG GIGPE + +++ Sbjct: 8 NIRTVKVPATFRAVSKQSLAPFRVRCAVASPGKK---RYTITLLPGDGIGPEVVSIAKNV 64 Query: 246 FK 251 + Sbjct: 65 LQ 66 >At1g31180.1 68414.m03817 3-isopropylmalate dehydrogenase, chloroplast, putative strong similarity to SP|P29102 3-isopropylmalate dehydrogenase, chloroplast precursor {Brassica napus}; EST gb|F14478 comes from this gene Length = 404 Score = 40.3 bits (90), Expect = 0.001 Identities = 23/57 (40%), Positives = 35/57 (61%) Frame = +1 Query: 583 KVVTADNSERVARFAFEFAKKNGRKKVTTVHKANIMKLSDGLFLETSRRLAKEYPDI 753 ++ A +R+AR AFE A+K R K+ +V KAN++ S L+ + LA EYPD+ Sbjct: 203 EIYAAHEIDRIARVAFETARKR-RGKLCSVDKANVLDASI-LWRKRVTALASEYPDV 257 Score = 30.3 bits (65), Expect = 1.4 Identities = 10/25 (40%), Positives = 18/25 (72%) Frame = +3 Query: 177 RHAVTMLPGGGIGPECMGYVRDIFK 251 R+ +T+LPG GIGPE + +++ + Sbjct: 43 RYNITLLPGDGIGPEVISVAKNVLQ 67 >At1g68890.1 68414.m07884 menaquinone biosynthesis protein-related similar to menaquinone biosynthesis protein menD [SP|P17109][E. coli] ; Pfam HMM hit: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase / 2-oxoglutarate decarboxylase Length = 894 Score = 32.7 bits (71), Expect = 0.27 Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 1/77 (1%) Frame = +2 Query: 164 AIRRSSRGDHAPWRRYRS*VHGIRSRHIQIL-GAPIDFEVVDIDPTMDNDDDVQYAITTI 340 +IRRS P S +HGIR R+I++ G D ++D D +D+D VQ +T Sbjct: 25 SIRRSRERFSFPESLRVSLLHGIR-RNIEVAQGVQFDGPIMDRDVNLDDDLVVQVCVTRT 83 Query: 341 KRNGVGLKGNIETKSEA 391 + L+ +E+ EA Sbjct: 84 LPPALTLELGLESLKEA 100 >At2g39930.1 68415.m04907 isoamylase, putative / starch debranching enzyme, putative similar to isoamylase from [Solanum tuberosum] GI:27728145, [Triticum aestivum] GI:17932898, [Hordeum vulgare] GI:21314275, [Oryza sativa] GI:3252794; contains Pfam profiles PF00128: Alpha amylase catalytic domain, PF02922: Isoamylase N-terminal domain Length = 783 Score = 30.7 bits (66), Expect = 1.1 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%) Frame = +3 Query: 111 DVQHKTPVIRKQKLIPKA-QYGGRHAVTMLPGGGIGPECMGYVRDIFK 251 D+ P++R KLI +A GG + V M P GI E G RD+ + Sbjct: 450 DMISNDPILRGVKLIAEAWDAGGLYQVGMFPHWGIWSEWNGKFRDVVR 497 >At2g27280.1 68415.m03278 hypothetical protein Length = 427 Score = 29.5 bits (63), Expect = 2.5 Identities = 15/33 (45%), Positives = 20/33 (60%) Frame = -3 Query: 254 VFEYVANVSHALRTDTASREHGHRVTTAVLRLR 156 V +++ S+ LR DTA +E VTTA RLR Sbjct: 27 VLDFIGKESNFLRKDTAEKEITDAVTTAKERLR 59 >At1g65580.1 68414.m07439 endonuclease/exonuclease/phosphatase family protein similar to inositol polyphosphate 5-phosphatase II isoform (GI:15418718) [Mus musculus]; contains 6 (5 weak) Pfam: Pf00400 WD domain, G-beta repeats and Pfam PF03372: Endonuclease/Exonuclease/phosphatase family Length = 1101 Score = 28.7 bits (61), Expect = 4.4 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%) Frame = -3 Query: 581 IDSTTPFTDSCSNIAYSPSVFCLIKQHQCPYVWS-QRQGKI 462 ++ T P+ +S N S +V C+I VWS R G+I Sbjct: 166 VEDTAPYKESLGNEFGSAAVVCMIGDEGSRVVWSGHRDGRI 206 >At3g18810.1 68416.m02389 protein kinase family protein contains Pfam PF00069: Protein kinase domain Length = 700 Score = 28.3 bits (60), Expect = 5.8 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 8/41 (19%) Frame = -1 Query: 268 NRSTEYLNMSRTYP--------MHSGPIPPPGSMVTA*RPP 170 N+S +N+S+ YP M+S P PPPGS + PP Sbjct: 242 NQSDHVMNLSQQYPGSNGNNNWMNSPPPPPPGSWQPSPPPP 282 >At2g22890.1 68415.m02717 expressed protein ; expression supported by MPSS Length = 279 Score = 28.3 bits (60), Expect = 5.8 Identities = 12/19 (63%), Positives = 14/19 (73%) Frame = -2 Query: 573 DHTIHGFVFQHSVFTFCVL 517 DH +HGFV S+F FCVL Sbjct: 176 DHVVHGFV---SMFAFCVL 191 >At1g80490.2 68414.m09430 WD-40 repeat family protein contains 9 WD-40 repeats domain (PF00400) (6 weak) Length = 1120 Score = 28.3 bits (60), Expect = 5.8 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%) Frame = -2 Query: 366 PFSPTPFLLMVVIAYWTSSSLSIV-GSMSTTSKSIGAPSI 250 PF PTP + +A W SS S+ ++S ++GAPSI Sbjct: 238 PFQPTPSPVPTPLAGWMSSPSSVPHPAVSGGPIALGAPSI 277 >At1g80490.1 68414.m09429 WD-40 repeat family protein contains 9 WD-40 repeats domain (PF00400) (6 weak) Length = 1120 Score = 28.3 bits (60), Expect = 5.8 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%) Frame = -2 Query: 366 PFSPTPFLLMVVIAYWTSSSLSIV-GSMSTTSKSIGAPSI 250 PF PTP + +A W SS S+ ++S ++GAPSI Sbjct: 238 PFQPTPSPVPTPLAGWMSSPSSVPHPAVSGGPIALGAPSI 277 >At1g29740.1 68414.m03636 leucine-rich repeat family protein / protein kinase family protein contains Pfam domains PF00560: Leucine Rich Repeat and PF00069: Protein kinase domain Length = 1049 Score = 28.3 bits (60), Expect = 5.8 Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 3/50 (6%) Frame = -1 Query: 163 ALGISFCFLITGVLCW---TSKSDNVAGAAFELRFTDPRTSDKTFNLVNK 23 AL +S FLI G L W S +D +F LR T D FN +NK Sbjct: 606 ALIVSLSFLILGALYWRICVSNADGEKRGSFSLRQLKVATDD--FNPLNK 653 >At5g56110.1 68418.m07000 myb family transcription factor contains PFAM profile: Myb DNA binding domain PF00249 Length = 320 Score = 27.9 bits (59), Expect = 7.7 Identities = 9/24 (37%), Positives = 15/24 (62%) Frame = -2 Query: 234 RIPCTQDRYRLQGAWSPRDDRRIA 163 RIPC + +G W+P +D ++A Sbjct: 3 RIPCCEKENVKRGQWTPEEDNKLA 26 >At5g07760.1 68418.m00888 formin homology 2 domain-containing protein / FH2 domain-containing protein contains formin homology 2 domain, Pfam:PF02181 Length = 853 Score = 27.9 bits (59), Expect = 7.7 Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 1/26 (3%) Frame = -1 Query: 214 PIPPPGSMVTA*RPPYCAL-GISFCF 140 P+PPP + PP CAL GI CF Sbjct: 99 PLPPPPLIFVGAPPPTCALKGIVCCF 124 >At1g80480.1 68414.m09427 PRLI-interacting factor L, putative similar to PRLI-interacting factor L [Arabidopsis thaliana] GI:11139268; contains Pfam profile PF02492: Cobalamin synthesis protein/P47K Length = 444 Score = 27.9 bits (59), Expect = 7.7 Identities = 12/39 (30%), Positives = 21/39 (53%) Frame = -3 Query: 620 LATLSELSAVTTFIDSTTPFTDSCSNIAYSPSVFCLIKQ 504 +ATLS L TTF+ T P + + N +S + ++ + Sbjct: 1 MATLSTLEIATTFLSFTAPRSSAAFNYRFSSAAVSVLSR 39 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 17,414,102 Number of Sequences: 28952 Number of extensions: 383367 Number of successful extensions: 1217 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 1101 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1210 length of database: 12,070,560 effective HSP length: 79 effective length of database: 9,783,352 effective search space used: 1672953192 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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