Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0138.Seq
         (612 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A5NV47 Cluster: LigA; n=1; Methylobacterium sp. 4-46|Re...    33   4.0  
UniRef50_Q4WYG4 Cluster: C6 transcription factor, putative; n=3;...    33   7.1  
UniRef50_Q1DE31 Cluster: Putative lipoprotein; n=1; Myxococcus x...    32   9.3  

>UniRef50_A5NV47 Cluster: LigA; n=1; Methylobacterium sp. 4-46|Rep:
           LigA - Methylobacterium sp. 4-46
          Length = 475

 Score = 33.5 bits (73), Expect = 4.0
 Identities = 19/38 (50%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = +1

Query: 391 PAG--ARRHVGVVGRHAGQTDRTLVLVYRDGGDAPRSR 498
           PAG   RR  G  GRH G+ D+  V   RD GD PR R
Sbjct: 359 PAGRAVRRCRGGGGRHGGRHDQHAVQPARDAGDPPRGR 396


>UniRef50_Q4WYG4 Cluster: C6 transcription factor, putative; n=3;
           Trichocomaceae|Rep: C6 transcription factor, putative -
           Aspergillus fumigatus (Sartorya fumigata)
          Length = 754

 Score = 32.7 bits (71), Expect = 7.1
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +3

Query: 72  RYRRPGADTVSIAATRQHTI*TYEPLVRAIHYTNINN 182
           R + PG +  + A+   HTI  +EPL  AI Y+ IN+
Sbjct: 267 RTQSPGVEEAADASRPDHTIHAFEPLALAIFYSAINS 303


>UniRef50_Q1DE31 Cluster: Putative lipoprotein; n=1; Myxococcus
           xanthus DK 1622|Rep: Putative lipoprotein - Myxococcus
           xanthus (strain DK 1622)
          Length = 691

 Score = 32.3 bits (70), Expect = 9.3
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +2

Query: 50  LNIVKSATLPKTGRRYSKYSSYPTTYNMNLRATSSGHTL 166
           + +  SA+L    + Y+ YS+ P TY + L AT  GHT+
Sbjct: 525 VTVAASASLSWGLQAYAPYSAAPGTYAVGLAATRDGHTV 563


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 552,596,258
Number of Sequences: 1657284
Number of extensions: 10388819
Number of successful extensions: 23280
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 22613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23272
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 43977329078
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)