Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0138.Seq
         (612 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    22   4.7  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   6.2  
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    21   8.2  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    21   8.2  

>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = -3

Query: 469 DRPELTSCLFVLRVAPPHQHGAWPRPV 389
           D PE++  L  + V     HG W R V
Sbjct: 692 DVPEISKYLDFINVMTYDFHGQWERTV 718


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = -3

Query: 469 DRPELTSCLFVLRVAPPHQHGAWPR 395
           D P L + L  + V     HGAW R
Sbjct: 818 DLPALGTVLDFMSVMTYDYHGAWER 842


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 5/7 (71%), Positives = 7/7 (100%)
 Frame = -3

Query: 403 WPRPVHV 383
           WP+PVH+
Sbjct: 78  WPKPVHI 84


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = +2

Query: 116 PTTYNMNLRATSSGHTL 166
           P TYN  L AT   H +
Sbjct: 509 PNTYNRFLAATGGDHVI 525


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,025
Number of Sequences: 336
Number of extensions: 2442
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15561709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)