Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0138.Seq
         (612 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A11.02 |cps3|mug188|zinc finger protein Cps3|Schizosaccharo...    26   3.7  
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos...    26   4.9  
SPBC1105.06 |pmc4|med4|RNA polymerase II holoenzyme component Pm...    26   4.9  
SPBPB2B2.10c |||galactose-1-phosphate uridylyltransferase |Schiz...    25   6.5  
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc...    25   8.6  

>SPAC3A11.02 |cps3|mug188|zinc finger protein
           Cps3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 583

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 59  VKSATLPKTGRRYSKYSSYPTTYNMNLRA 145
           VKS+T P +G ++   SSYP T   +L +
Sbjct: 235 VKSSTSPFSGSKFLSSSSYPHTPEAHLNS 263


>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 855

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
 Frame = -2

Query: 488 GASPPSR*TRTNVLSVCPACRP-TTPTWRLAPAG 390
           G +   R   TN    C  C+  TTP WR +P G
Sbjct: 619 GDANTRRANATNPTPTCTNCQTRTTPLWRRSPDG 652


>SPBC1105.06 |pmc4|med4|RNA polymerase II holoenzyme component Pmc4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 239

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +2

Query: 59  VKSATLPKTGRRYSKYSSYPTTYN 130
           V + TL   GR+ SK+SS P  YN
Sbjct: 102 VNAETLLDYGRKLSKFSSAPPGYN 125


>SPBPB2B2.10c |||galactose-1-phosphate uridylyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 369

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 8/26 (30%), Positives = 12/26 (46%)
 Frame = -2

Query: 122 LSGSCYTYCICARSSVTLPTSRCSVI 45
           + G C+  C C   ++TLP      I
Sbjct: 114 VKGKCFVICFCPNHNLTLPLMSAEAI 139


>SPBC2F12.05c |||sterol binding ankyrin repeat
            protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1310

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 11/37 (29%), Positives = 16/37 (43%)
 Frame = +3

Query: 405  APCWCGGATRRTNRQDVSSGLSRWWRCPEVASETHLA 515
            +P W   A      +D     + +W+  E A E HLA
Sbjct: 1261 SPRWFSAAKHPVTGEDYWQFNNEYWKIREEAGEAHLA 1297


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,202,040
Number of Sequences: 5004
Number of extensions: 39684
Number of successful extensions: 80
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)