Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0138.Seq
         (612 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0480 + 6279576-6279755,6279863-6279988,6280074-6280151,628...    30   1.3  
01_07_0084 + 40976976-40977164,40978174-40978201,40978445-409785...    28   5.1  
05_04_0299 - 19958776-19958858,19958883-19959012,19960131-199601...    28   6.7  
10_08_0433 - 17889072-17889632,17890437-17890514,17892196-17892393     27   8.9  

>04_01_0480 +
           6279576-6279755,6279863-6279988,6280074-6280151,
           6280847-6280972,6281244-6281345,6281416-6281490,
           6281852-6281975,6283005-6283107,6283546-6283617,
           6283662-6283788,6284125-6284180,6284438-6284453
          Length = 394

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -2

Query: 155 PN*WLVSSYCMLSGSCYTYCICARSSVTLPT 63
           P+ W++  YC   G+ Y Y IC  S  T  T
Sbjct: 43  PDGWIMEVYCDDDGTIYRYYICPLSGTTFTT 73


>01_07_0084 + 40976976-40977164,40978174-40978201,40978445-40978575,
            40978941-40979434,40979516-40979609,40979686-40979779,
            40980342-40980444,40980550-40980601,40980716-40980756,
            40980881-40980960,40981490-40981936,40982378-40982554,
            40983205-40983803,40983886-40985040
          Length = 1227

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +2

Query: 95   YSKYSSYPTTYNMNLRATSSGHTLHKHQ*LN 187
            YS +S+  TTYN    A  S H+LH  Q L+
Sbjct: 1039 YSNHSTQATTYNSYGSAPVSSHSLHPGQGLD 1069


>05_04_0299 -
           19958776-19958858,19958883-19959012,19960131-19960175,
           19960252-19960370,19960450-19960543,19961824-19961985,
           19962117-19962266,19962472-19962537,19962934-19962981,
           19963654-19963866,19963953-19964078,19964155-19964232,
           19964600-19964671,19965522-19965953,19966863-19966925,
           19967497-19967898
          Length = 760

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -2

Query: 113 SCYTYCICARSSVTLPTSRCSVILIKG 33
           SCY++C+C    V L ++  S + I G
Sbjct: 539 SCYSFCMCPGGQVVLTSTNPSELCING 565


>10_08_0433 - 17889072-17889632,17890437-17890514,17892196-17892393
          Length = 278

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +1

Query: 334 AAVCLELHVRCLRHYRIREPAGARRHVGVVGRHAGQ 441
           A  C   +V+C+  + +RE    R+H   V  +AG+
Sbjct: 190 ALYCGVCNVKCMTRFNLREHEAGRKHRDKVASNAGE 225


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,324,982
Number of Sequences: 37544
Number of extensions: 304530
Number of successful extensions: 672
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 672
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)