Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0138.Seq
         (612 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99102-1|CAB11776.1|  523|Caenorhabditis elegans Hypothetical pr...    28   4.6  
Z81110-6|CAB03260.2| 1011|Caenorhabditis elegans Hypothetical pr...    27   8.0  
Z81110-2|CAB03259.1|  802|Caenorhabditis elegans Hypothetical pr...    27   8.0  
AF016654-1|AAB66028.1|  731|Caenorhabditis elegans Hypothetical ...    27   8.0  

>Z99102-1|CAB11776.1|  523|Caenorhabditis elegans Hypothetical
           protein B0331.2 protein.
          Length = 523

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 8/31 (25%), Positives = 19/31 (61%)
 Frame = -2

Query: 140 VSSYCMLSGSCYTYCICARSSVTLPTSRCSV 48
           +S +C+  G+ +T  IC +  + + ++ C+V
Sbjct: 443 ISGFCIEVGTAFTVLICVKFGIPISSTHCTV 473


>Z81110-6|CAB03260.2| 1011|Caenorhabditis elegans Hypothetical
           protein T01D3.3b protein.
          Length = 1011

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 4/26 (15%)
 Frame = -2

Query: 119 SGSCYTYCICARSSVTL----PTSRC 54
           SG C++ C+C +  V L    PTSRC
Sbjct: 591 SGQCFSGCVCRQPYVLLHPNDPTSRC 616


>Z81110-2|CAB03259.1|  802|Caenorhabditis elegans Hypothetical
           protein T01D3.3a protein.
          Length = 802

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 4/26 (15%)
 Frame = -2

Query: 119 SGSCYTYCICARSSVTL----PTSRC 54
           SG C++ C+C +  V L    PTSRC
Sbjct: 382 SGQCFSGCVCRQPYVLLHPNDPTSRC 407


>AF016654-1|AAB66028.1|  731|Caenorhabditis elegans Hypothetical
           protein C17A2.5 protein.
          Length = 731

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = -1

Query: 423 HHTNMAPGPGRFTYAIV 373
           +HT++ PGPG+F  A++
Sbjct: 491 NHTSLEPGPGKFKLAVI 507


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,578,853
Number of Sequences: 27780
Number of extensions: 240803
Number of successful extensions: 511
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 511
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)