Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0138.Seq
         (612 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    25   0.58 
DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex det...    23   3.1  
DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex det...    23   3.1  
DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex det...    23   3.1  
DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex det...    23   3.1  
DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex det...    23   3.1  
DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex det...    23   3.1  
DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex det...    23   3.1  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    22   5.4  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    22   5.4  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   5.4  

>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 25.0 bits (52), Expect = 0.58
 Identities = 11/31 (35%), Positives = 13/31 (41%)
 Frame = +3

Query: 402 QAPCWCGGATRRTNRQDVSSGLSRWWRCPEV 494
           Q   W G      N  D + G  R+WR P V
Sbjct: 258 QTKGWDGSNMVEGNESDHNDGRLRYWRTPSV 288


>DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +2

Query: 92  RYSKYSSYPTTYNMNLR 142
           +YS Y++Y   YN N +
Sbjct: 90  KYSNYNNYNNNYNTNYK 106


>DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +2

Query: 92  RYSKYSSYPTTYNMNLR 142
           +YS Y++Y   YN N +
Sbjct: 90  KYSNYNNYNNNYNTNYK 106


>DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +2

Query: 92  RYSKYSSYPTTYNMNLR 142
           +YS Y++Y   YN N +
Sbjct: 90  KYSNYNNYNNNYNTNYK 106


>DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +2

Query: 92  RYSKYSSYPTTYNMNLR 142
           +YS Y++Y   YN N +
Sbjct: 90  KYSNYNNYNNNYNTNYK 106


>DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +2

Query: 92  RYSKYSSYPTTYNMNLR 142
           +YS Y++Y   YN N +
Sbjct: 90  KYSNYNNYNNNYNTNYK 106


>DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +2

Query: 92  RYSKYSSYPTTYNMNLR 142
           +YS Y++Y   YN N +
Sbjct: 90  KYSNYNNYNNNYNTNYK 106


>DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +2

Query: 92  RYSKYSSYPTTYNMNLR 142
           +YS Y++Y   YN N +
Sbjct: 90  KYSNYNNYNNNYNTNYK 106


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +2

Query: 92  RYSKYSSYPTTYNMN 136
           +YS Y++Y   YN N
Sbjct: 90  KYSNYNNYNNNYNNN 104


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +2

Query: 92  RYSKYSSYPTTYNMN 136
           +YS Y++Y   YN N
Sbjct: 90  KYSNYNNYNNNYNNN 104


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 9/21 (42%), Positives = 12/21 (57%), Gaps = 1/21 (4%)
 Frame = +2

Query: 500 RDTFSCTGRRHPPSSW-NVGW 559
           RD     G R PP++W +V W
Sbjct: 149 RDARIVNGTRQPPNNWLSVFW 169


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,308
Number of Sequences: 438
Number of extensions: 3180
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18093444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)