Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0137.Seq
         (642 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom...    27   3.0  
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo...    27   3.0  
SPAC13G6.11c |erg12||mevalonate kinase Erg12 |Schizosaccharomyce...    26   5.3  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    25   7.0  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    25   7.0  
SPAPB1A10.11c |||glutamyl-tRNA synthetase, mitochondrial|Schizos...    25   9.3  

>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 204

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
 Frame = +1

Query: 337 PPLPAPDRYR*RIHRSATATGASKVKP-PAPKATENRVHARCEET*P 474
           PP   P  Y      +  A  AS   P PAP A++NR +    +  P
Sbjct: 58  PPSGPPPSYSNSAAPATPAASASSAAPAPAPAASQNRAYGAAPQPYP 104


>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
           Sap49|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 335

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +1

Query: 421 APKATENRVHARCEET*PADRSKKTPAPPDARNQP 525
           A  A +N+V    + T P   S  TPAP  A N P
Sbjct: 194 AAAAKKNKVAVTPQSTLPPGFSPATPAPTSAANTP 228


>SPAC13G6.11c |erg12||mevalonate kinase Erg12 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 404

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = -2

Query: 95  STKVSEQGVGELTASTPLQEQAIADALDG 9
           STK   QGV EL    P    +I DA+DG
Sbjct: 239 STKKLVQGVFELKERLPTVIDSIIDAIDG 267


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 22/99 (22%), Positives = 45/99 (45%), Gaps = 2/99 (2%)
 Frame = +3

Query: 291 ARKRRLVSSQINATISATTSARPIPLTDSPFSHSHGCQQSKTTCAKSNRK*STRQVRGNV 470
           A    L SS +N+T SAT ++  +  T +  S +     S +  + ++   ++  +   V
Sbjct: 190 ATSSSLASSSLNSTTSATATSSSLSSTAASNSATSSSLASSSLNSTTSATATSSSISSTV 249

Query: 471 -ARRPL-KKNASTAGCQESAPARNYRDRDKTDLAAQYPA 581
            +  PL   N++TA    SA + + +    + L +  P+
Sbjct: 250 SSSTPLTSSNSTTAATSASATSSSAQYNTSSLLPSSTPS 288


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 17/64 (26%), Positives = 23/64 (35%)
 Frame = +1

Query: 340  PLPAPDRYR*RIHRSATATGASKVKPPAPKATENRVHARCEET*PADRSKKTPAPPDARN 519
            PLP+ D     +  +A         PP PK++     A      P+      PAP  A  
Sbjct: 1025 PLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPP 1084

Query: 520  QPQP 531
             P P
Sbjct: 1085 VPAP 1088


>SPAPB1A10.11c |||glutamyl-tRNA synthetase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 526

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +1

Query: 58  VNSPTPCSLTLVDDPNQFHGLAADQLTD 141
           V+   P + T +D   ++H ++ D LTD
Sbjct: 136 VSYSVPIATTKIDSSTKYHEISIDDLTD 163


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,662,591
Number of Sequences: 5004
Number of extensions: 53827
Number of successful extensions: 180
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)