Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0135X.Seq
         (548 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1539.06 |||acyl-coenzyme A binding protein |Schizosaccharomy...    84   1e-17
SPBC3B9.09 |vps36||RBZ zinc finger protein Vps36|Schizosaccharom...    25   7.3  
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||...    25   9.7  
SPCC191.01 ||SPCC417.13|sequence orphan|Schizosaccharomyces pomb...    25   9.7  

>SPBC1539.06 |||acyl-coenzyme A binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 87

 Score = 83.8 bits (198), Expect = 1e-17
 Identities = 41/70 (58%), Positives = 51/70 (72%)
 Frame = +1

Query: 37  LQEKFDQAAANVKNLKALPTDAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKFDAWH 216
           +   F+QAAA+VK LK  P   +LL LYA FKQATVGD +   +PGLLDLKGK K++AW 
Sbjct: 1   MSSTFEQAAADVKELKETPNSDELLKLYALFKQATVGD-NNTEKPGLLDLKGKFKWNAWE 59

Query: 217 KLAGTSKDDA 246
           +L G SK+DA
Sbjct: 60  ELKGKSKEDA 69


>SPBC3B9.09 |vps36||RBZ zinc finger protein
           Vps36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 467

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +2

Query: 371 ARFFASSAHIRLF*RHLYFTFLFEMCFFL 457
           +R+F SS  IRL  RH+  ++  ++C F+
Sbjct: 79  SRYFRSSPKIRLSLRHVEKSWACKICTFI 107


>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 710

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 88  LPTDAQLLNLYAHFKQATV 144
           LP +   ++LY HFKQA V
Sbjct: 210 LPAEVTPIDLYNHFKQAGV 228


>SPCC191.01 ||SPCC417.13|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 178

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +1

Query: 52  DQAAANVKNLKALPTDAQLLNLYAHFKQATVGDAD 156
           DQ   NV++  + P   QL+ L+    +A V DAD
Sbjct: 40  DQFFRNVRDTISEPKFTQLMELWLEKSRAEVPDAD 74


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,322,839
Number of Sequences: 5004
Number of extensions: 47617
Number of successful extensions: 111
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)