Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0135X.Seq
(548 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0417 - 3692247-3692329,3692442-3692504,3693233-3693350,369... 62 2e-10
03_05_0107 - 20883353-20883627,20883739-20883801,20884608-208847... 62 3e-10
06_01_0108 - 860080-860162,860276-860338,860857-860974,861481-86... 59 3e-09
04_04_1623 - 34846056-34846223,34846547-34846644,34846738-348468... 44 8e-05
03_01_0314 - 2477593-2480685 28 5.6
04_04_0872 + 28903099-28903644,28903739-28904544,28904620-28905004 27 7.5
02_01_0428 - 3127098-3129254 27 7.5
03_02_0834 - 11630288-11630500,11630531-11630623,11630844-116310... 27 9.9
01_05_0353 + 21278753-21278884,21279482-21279535,21279912-212799... 27 9.9
>08_01_0417 -
3692247-3692329,3692442-3692504,3693233-3693350,
3694084-3694095
Length = 91
Score = 62.5 bits (145), Expect = 2e-10
Identities = 32/72 (44%), Positives = 44/72 (61%)
Frame = +1
Query: 31 MSLQEKFDQAAANVKNLKALPTDAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKFDA 210
M LQE F+Q A K L ++ L LY +KQATVGD + A RPG+ + +AK+DA
Sbjct: 1 MGLQEDFEQYAEKAKTLPESTSNENKLILYGLYKQATVGDVNTA-RPGIFAQRDRAKWDA 59
Query: 211 WHKLAGTSKDDA 246
W + G SK++A
Sbjct: 60 WKAVEGKSKEEA 71
>03_05_0107 -
20883353-20883627,20883739-20883801,20884608-20884725,
20885012-20885023
Length = 155
Score = 62.1 bits (144), Expect = 3e-10
Identities = 31/72 (43%), Positives = 45/72 (62%)
Frame = +1
Query: 31 MSLQEKFDQAAANVKNLKALPTDAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKFDA 210
M LQE F++ A VK L ++ L LY +KQATVGD + +RPG+ + +AK+DA
Sbjct: 1 MGLQEDFEEYAEKVKTLPESTSNEDKLILYGLYKQATVGDVN-TSRPGIFAQRDRAKWDA 59
Query: 211 WHKLAGTSKDDA 246
W + G SK++A
Sbjct: 60 WKAVEGKSKEEA 71
>06_01_0108 -
860080-860162,860276-860338,860857-860974,861481-861492
Length = 91
Score = 58.8 bits (136), Expect = 3e-09
Identities = 30/72 (41%), Positives = 43/72 (59%)
Frame = +1
Query: 31 MSLQEKFDQAAANVKNLKALPTDAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKFDA 210
M LQE+F++ A K L ++ L LY +KQATVG RPG+ +LK + K+DA
Sbjct: 1 MGLQEEFEEFAEKAKTLPDTISNEDKLLLYGLYKQATVGPVT-TGRPGIFNLKDRYKWDA 59
Query: 211 WHKLAGTSKDDA 246
W + G SK++A
Sbjct: 60 WKAVEGKSKEEA 71
>04_04_1623 -
34846056-34846223,34846547-34846644,34846738-34846829,
34847096-34847202,34847385-34847490,34848108-34848547
Length = 336
Score = 44.0 bits (99), Expect = 8e-05
Identities = 25/64 (39%), Positives = 37/64 (57%)
Frame = +1
Query: 61 AANVKNLKALPTDAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKFDAWHKLAGTSKD 240
AA+ + ++P AQL LY +K AT G A +P L LK +AK++AWHKL +
Sbjct: 102 AASAASGTSVPEQAQL-QLYGLYKIATEGPCT-APQPSALKLKARAKWNAWHKLGAMPTE 159
Query: 241 DAQK 252
+A +
Sbjct: 160 EAMQ 163
>03_01_0314 - 2477593-2480685
Length = 1030
Score = 27.9 bits (59), Expect = 5.6
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = -1
Query: 287 GSYEPFDDLDVAFWASSFEVPASLCQASNL 198
G +P LDV+ A S VPA LC + NL
Sbjct: 353 GKAQPLQWLDVSTNALSGPVPAGLCDSGNL 382
>04_04_0872 + 28903099-28903644,28903739-28904544,28904620-28905004
Length = 578
Score = 27.5 bits (58), Expect = 7.5
Identities = 18/47 (38%), Positives = 23/47 (48%)
Frame = -1
Query: 206 SNLALPFKSRRPGLLAGSASPTVACLKWAYKLRSWASVGRAFRFFTL 66
+N ALP K P A+P+ A L WA S+ +V R F F L
Sbjct: 389 TNEALP-KELHPVYSMFIATPSAASLAWAAIYGSFDAVARTFFFMAL 434
>02_01_0428 - 3127098-3129254
Length = 718
Score = 27.5 bits (58), Expect = 7.5
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = -1
Query: 287 GSYEPFDDLDVAFWASSFEVPASLCQASNLAL 192
G + D LD++F + S E+P ++C +NL +
Sbjct: 571 GRLKALDMLDLSFNSFSGEIPQAICNLTNLEM 602
>03_02_0834 -
11630288-11630500,11630531-11630623,11630844-11631050,
11631301-11633089,11633817-11634145
Length = 876
Score = 27.1 bits (57), Expect = 9.9
Identities = 7/24 (29%), Positives = 19/24 (79%)
Frame = -3
Query: 465 CVLKKKHISNKNVK*RWRQKSLMC 394
C+LK+ H+S +++ + +++S++C
Sbjct: 697 CILKQDHLSKDDIEFKLKEESMLC 720
>01_05_0353 +
21278753-21278884,21279482-21279535,21279912-21279991,
21280099-21280361,21280837-21280958
Length = 216
Score = 27.1 bits (57), Expect = 9.9
Identities = 9/13 (69%), Positives = 9/13 (69%)
Frame = +3
Query: 117 VCPFQTGHSWRCR 155
V P TGH WRCR
Sbjct: 113 VAPHSTGHVWRCR 125
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,568,041
Number of Sequences: 37544
Number of extensions: 296808
Number of successful extensions: 686
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 683
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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