Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0135X.Seq
         (548 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003140-9|AAB54171.1|   86|Caenorhabditis elegans Acyl-coenzyme...    85   2e-17
Z46794-8|CAA86779.1|  385|Caenorhabditis elegans Hypothetical pr...    70   1e-12
Z68004-6|CAA91987.2|  116|Caenorhabditis elegans Hypothetical pr...    60   1e-09
Z92826-2|CAB07319.1|  266|Caenorhabditis elegans Hypothetical pr...    46   2e-05
AL023828-1|CAA19448.1|  115|Caenorhabditis elegans Hypothetical ...    40   0.002
Z81120-7|CAB03343.2|  274|Caenorhabditis elegans Hypothetical pr...    38   0.006
Z95559-11|CAB09005.2|  435|Caenorhabditis elegans Hypothetical p...    27   6.7  

>AF003140-9|AAB54171.1|   86|Caenorhabditis elegans Acyl-coenzyme a
           binding proteinprotein 1 protein.
          Length = 86

 Score = 85.4 bits (202), Expect = 2e-17
 Identities = 41/69 (59%), Positives = 51/69 (73%)
 Frame = +1

Query: 49  FDQAAANVKNLKALPTDAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKFDAWHKLAG 228
           FD AAA VK LK  P++ +LL LYA FKQ TVGD +  ++PG+ DLKGKAK+ AW +  G
Sbjct: 5   FDDAAATVKTLKTSPSNDELLKLYALFKQGTVGD-NTTDKPGMFDLKGKAKWSAWDEKKG 63

Query: 229 TSKDDAQKA 255
            +KDDAQKA
Sbjct: 64  LAKDDAQKA 72


>Z46794-8|CAA86779.1|  385|Caenorhabditis elegans Hypothetical
           protein R06F6.9 protein.
          Length = 385

 Score = 70.1 bits (164), Expect = 1e-12
 Identities = 33/74 (44%), Positives = 47/74 (63%)
 Frame = +1

Query: 28  NMSLQEKFDQAAANVKNLKALPTDAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKFD 207
           + S Q  F++A  N+K LK  P +   L LY  FKQAT GD     RPG++D  G+AK+D
Sbjct: 22  SFSAQADFEKAQKNLKTLKEEPDNDVKLQLYGLFKQATAGDVQ-GKRPGMMDFVGRAKYD 80

Query: 208 AWHKLAGTSKDDAQ 249
           AW+ L G ++D+A+
Sbjct: 81  AWNTLKGQTQDEAR 94


>Z68004-6|CAA91987.2|  116|Caenorhabditis elegans Hypothetical
           protein F47B10.7 protein.
          Length = 116

 Score = 59.7 bits (138), Expect = 1e-09
 Identities = 32/78 (41%), Positives = 51/78 (65%), Gaps = 4/78 (5%)
 Frame = +1

Query: 31  MSLQEKFDQAAANVKNL-KALP---TDAQLLNLYAHFKQATVGDADPANRPGLLDLKGKA 198
           MSLQEKFD A   ++ L K  P   ++ Q L  Y+ FKQA++GD +  +RPG+  +  + 
Sbjct: 1   MSLQEKFDAAVEIIQKLPKTGPVATSNDQKLTFYSLFKQASIGDVN-TDRPGIFSIIERK 59

Query: 199 KFDAWHKLAGTSKDDAQK 252
           K+D+W +L G S+D+A++
Sbjct: 60  KWDSWKELEGVSQDEAKE 77


>Z92826-2|CAB07319.1|  266|Caenorhabditis elegans Hypothetical
           protein C18D11.2 protein.
          Length = 266

 Score = 45.6 bits (103), Expect = 2e-05
 Identities = 22/49 (44%), Positives = 32/49 (65%)
 Frame = +1

Query: 109 LNLYAHFKQATVGDADPANRPGLLDLKGKAKFDAWHKLAGTSKDDAQKA 255
           LN YA FKQAT G  D   +P   D++G  K++AW+KL   + D+A++A
Sbjct: 28  LNFYALFKQATHGKCD-LPKPSFYDIQGVYKWNAWNKLDNMTMDEAKQA 75


>AL023828-1|CAA19448.1|  115|Caenorhabditis elegans Hypothetical
           protein Y17G7B.1 protein.
          Length = 115

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
 Frame = +1

Query: 49  FDQAAANVKNLKALPTDAQLLNLYAHFKQATVGDA--DPANRPGLLDLKGKAKFDAWHKL 222
           F+ AA  ++ LK+ PTD + L LYA +KQA  GD   +        D  G+ K+ AW   
Sbjct: 15  FEIAAEEMRRLKSEPTDRERLKLYALYKQALHGDIPNEDVYPVPAGDEVGRKKYAAWKSQ 74

Query: 223 AGTSKD 240
            G + +
Sbjct: 75  KGANSE 80


>Z81120-7|CAB03343.2|  274|Caenorhabditis elegans Hypothetical
           protein T12D8.3 protein.
          Length = 274

 Score = 37.5 bits (83), Expect = 0.006
 Identities = 21/77 (27%), Positives = 33/77 (42%)
 Frame = +1

Query: 25  INMSLQEKFDQAAANVKNLKALPTDAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKF 204
           I+  L+ KFD A   +           +L  Y  +KQA  G AD    P   +   + KF
Sbjct: 24  IDTLLEAKFDAATTRLPGFLTKIDQKTILKFYGLYKQAVEGPADSKKGPYWFETVARKKF 83

Query: 205 DAWHKLAGTSKDDAQKA 255
           ++W   +  S+  A +A
Sbjct: 84  NSWLANSQMSRSRAMEA 100


>Z95559-11|CAB09005.2|  435|Caenorhabditis elegans Hypothetical
           protein Y41E3.7a protein.
          Length = 435

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +1

Query: 109 LNLYAHFKQATVGD-ADPANRPGLLDLKGKAKFDAWHKLAGTSKDDA 246
           + L +  KQ   G+ +D  +  G LD+ G     AW +L   S+D+A
Sbjct: 51  IKLLSLSKQVQHGEISDEFDNAGWLDITGNDVNKAWRELGSLSRDEA 97


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,650,470
Number of Sequences: 27780
Number of extensions: 263428
Number of successful extensions: 571
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 565
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)