Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0135X.Seq
         (548 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g31812.1 68414.m03905 acyl-CoA binding protein / ACBP identic...    63   1e-10
At3g05420.2 68416.m00594 acyl-CoA binding family protein similar...    29   2.0  
At3g05420.1 68416.m00593 acyl-CoA binding family protein similar...    29   2.0  
At3g13620.1 68416.m01714 amino acid permease family protein weak...    29   2.7  
At4g04070.1 68417.m00576 hypothetical protein low similarity to ...    27   6.2  
At2g42790.1 68415.m05298 citrate synthase, glyoxysomal, putative...    27   8.3  
At1g61370.1 68414.m06916 S-locus lectin protein kinase family pr...    27   8.3  

>At1g31812.1 68414.m03905 acyl-CoA binding protein / ACBP identical
           to acyl-CoA-binding protein (ACBP) [Arabidopsis
           thaliana] SWISS-PROT:P57752
          Length = 92

 Score = 63.3 bits (147), Expect = 1e-10
 Identities = 30/72 (41%), Positives = 45/72 (62%)
 Frame = +1

Query: 31  MSLQEKFDQAAANVKNLKALPTDAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKFDA 210
           M L+E+F++ A  V  L  LP++  LL LY  +KQA  G  D  +RPG+  +K +AK+DA
Sbjct: 1   MGLKEEFEEHAEKVNTLTELPSNEDLLILYGLYKQAKFGPVD-TSRPGMFSMKERAKWDA 59

Query: 211 WHKLAGTSKDDA 246
           W  + G S ++A
Sbjct: 60  WKAVEGKSSEEA 71


>At3g05420.2 68416.m00594 acyl-CoA binding family protein similar to
           PIR|S68824|S68824 rngB protein, cytosolic (Dictyostelium
           discoideum); contains Pfam profiles PF00887: Acyl CoA
           binding protein, PF01344: Kelch motif
          Length = 669

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 21/67 (31%), Positives = 33/67 (49%)
 Frame = +1

Query: 52  DQAAANVKNLKALPTDAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKFDAWHKLAGT 231
           D +A NV  +   P D  LL LYA ++QATVG  +   +P       ++K+ +W  L   
Sbjct: 29  DSSAKNV--ISKFPDDTALL-LYALYQQATVGPCN-TPKPSAWRPVEQSKWKSWQGLGTM 84

Query: 232 SKDDAQK 252
              +A +
Sbjct: 85  PSIEAMR 91


>At3g05420.1 68416.m00593 acyl-CoA binding family protein similar to
           PIR|S68824|S68824 rngB protein, cytosolic (Dictyostelium
           discoideum); contains Pfam profiles PF00887: Acyl CoA
           binding protein, PF01344: Kelch motif
          Length = 668

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 21/67 (31%), Positives = 33/67 (49%)
 Frame = +1

Query: 52  DQAAANVKNLKALPTDAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKFDAWHKLAGT 231
           D +A NV  +   P D  LL LYA ++QATVG  +   +P       ++K+ +W  L   
Sbjct: 29  DSSAKNV--ISKFPDDTALL-LYALYQQATVGPCN-TPKPSAWRPVEQSKWKSWQGLGTM 84

Query: 232 SKDDAQK 252
              +A +
Sbjct: 85  PSIEAMR 91


>At3g13620.1 68416.m01714 amino acid permease family protein weak
           similarity to SP|Q9WTR6 Cystine/glutamate transporter
           (Amino acid transport system xc-) {Mus musculus};
           contains Pfam profile PF00324: Amino acid permease
          Length = 478

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -1

Query: 122 AYKLRSWASVGRAFRFFTLAAAWSNFSWRDILI 24
           AY+L   A +G   +FF + + W N  W  ILI
Sbjct: 314 AYQLEGMAELGFLPKFFGVRSKWFNTPWVGILI 346


>At4g04070.1 68417.m00576 hypothetical protein low similarity to
           protective antigen [Streptococcus pyogenes] GI:8996050,
           fibrinogen-binding protein [Streptococcus equi]
           GI:3093478
          Length = 728

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 19/67 (28%), Positives = 31/67 (46%)
 Frame = +2

Query: 95  LMPNSLTCMPISNRPQLEMPIQPIDLVF*T*RVKPNLTLGTNWPALRRMMPRKLHRDRRR 274
           ++P +    PI   P++E P+   DL      + P+ +  +  P +RRM    LH  R  
Sbjct: 224 IVPPTAQLDPIEEVPRIE-PVPQADLPI----IPPDSSSTSELPLIRRMRCPSLHVQRAN 278

Query: 275 AHSFHRA 295
           A +  RA
Sbjct: 279 AEAHARA 285


>At2g42790.1 68415.m05298 citrate synthase, glyoxysomal, putative
           strong similarity to SP|P49299 Citrate synthase,
           glyoxysomal precursor {Cucurbita maxima}; contains Pfam
           profile PF00285: Citrate synthase
          Length = 509

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +3

Query: 336 DNFHYRVYYINTRAFSHHQRTSDFFDAIFILH 431
           DNF Y +  +  R++  + R +   D +FILH
Sbjct: 250 DNFLYMLDSLGNRSYKPNPRLARVLDILFILH 281


>At1g61370.1 68414.m06916 S-locus lectin protein kinase family
           protein contains Pfam domains, PF00954: S-locus
           glycoprotein family, PF00069: Protein kinase domain, and
           PF01453: Lectin (probable mannose binding)
          Length = 814

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 15/41 (36%), Positives = 16/41 (39%)
 Frame = -1

Query: 248 WASSFEVPASLCQASNLALPFKSRRPGLLAGSASPTVACLK 126
           W +  E P S C   N   PF     GL   S  P   CLK
Sbjct: 275 WVTDLEAPVSSCDVYNTCGPF-----GLCIRSNPPKCECLK 310


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,871,137
Number of Sequences: 28952
Number of extensions: 241937
Number of successful extensions: 586
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 585
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)