Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0134.Seq
         (532 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52884| Best HMM Match : No HMM Matches (HMM E-Value=.)              54   1e-07
SB_41561| Best HMM Match : Merozoite_SPAM (HMM E-Value=0.28)           30   1.4  
SB_14799| Best HMM Match : Cyclotide (HMM E-Value=6.8)                 29   3.1  
SB_8386| Best HMM Match : SAB (HMM E-Value=2.5)                        29   3.1  
SB_6522| Best HMM Match : Cyclotide (HMM E-Value=6.8)                  29   3.1  
SB_6521| Best HMM Match : SAB (HMM E-Value=2.5)                        29   3.1  
SB_32857| Best HMM Match : TolA (HMM E-Value=1.1)                      28   4.1  
SB_15187| Best HMM Match : PilN (HMM E-Value=7.5)                      27   7.2  

>SB_52884| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 192

 Score = 53.6 bits (123), Expect = 1e-07
 Identities = 22/45 (48%), Positives = 30/45 (66%)
 Frame = -1

Query: 505 EEANDKHLTAWADICRKYSLQHTPLEPSAGVELLLNKQLCLDGTK 371
           E++NDKHL  W++ C K  +Q TPL P    ELL +K L +DG+K
Sbjct: 125 EDSNDKHLAPWSEACNKDKIQATPLSPYLDQELLYDKHLSIDGSK 169


>SB_41561| Best HMM Match : Merozoite_SPAM (HMM E-Value=0.28)
          Length = 1643

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -2

Query: 366 RADATGRAQTYRRTVQRGF-RRLCFDATLPQGT 271
           R+D T R  T+   +Q G  RRL FD  L +GT
Sbjct: 596 RSDGTNRRLTFDTVLQEGTNRRLTFDTVLQEGT 628



 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = -2

Query: 360 DATGRAQTYRRTVQRG-FRRLCFDATLPQGT 271
           D T R  T+   +Q G +RRL FD  L  GT
Sbjct: 780 DGTNRRLTFDTVLQDGTYRRLTFDTVLQDGT 810


>SB_14799| Best HMM Match : Cyclotide (HMM E-Value=6.8)
          Length = 133

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
 Frame = +3

Query: 345 HVQLHQRAHLVPSRQSCLLRSSSTPALG---SSGVCWREYLRQMSAHAVRCLSLASSAQT 515
           H  L +R   +    +CL R   T  LG      + W+E++  +   +   LSLA  A  
Sbjct: 47  HHSLDERQLQITCGDTCLKRIECTKLLGVHMDHRLTWKEHVDHVLRSSYGTLSLAPEAPV 106

Query: 516 LC 521
           LC
Sbjct: 107 LC 108


>SB_8386| Best HMM Match : SAB (HMM E-Value=2.5)
          Length = 154

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
 Frame = +3

Query: 345 HVQLHQRAHLVPSRQSCLLRSSSTPALG---SSGVCWREYLRQMSAHAVRCLSLASSAQT 515
           H  L +R   +    +CL R   T  LG      + W+E++  +   +   LSLA  A  
Sbjct: 68  HHSLDERQLQITCGDTCLKRIECTKLLGVHMDHRLTWKEHVDHVLRSSYGTLSLAPEAPV 127

Query: 516 LC 521
           LC
Sbjct: 128 LC 129


>SB_6522| Best HMM Match : Cyclotide (HMM E-Value=6.8)
          Length = 292

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
 Frame = +3

Query: 345 HVQLHQRAHLVPSRQSCLLRSSSTPALG---SSGVCWREYLRQMSAHAVRCLSLASSAQT 515
           H  L +R   +    +CL R   T  LG      + W+E++  +   +   LSLA  A  
Sbjct: 206 HHSLDERQLQITCGDTCLKRIECTKLLGVHMDHRLTWKEHVDHVLRSSYGTLSLAPEAPV 265

Query: 516 LC 521
           LC
Sbjct: 266 LC 267


>SB_6521| Best HMM Match : SAB (HMM E-Value=2.5)
          Length = 154

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
 Frame = +3

Query: 345 HVQLHQRAHLVPSRQSCLLRSSSTPALG---SSGVCWREYLRQMSAHAVRCLSLASSAQT 515
           H  L +R   +    +CL R   T  LG      + W+E++  +   +   LSLA  A  
Sbjct: 68  HHSLDERQLQITCGDTCLKRIECTKLLGVHMDHRLTWKEHVDHVLRSSYGTLSLAPEAPV 127

Query: 516 LC 521
           LC
Sbjct: 128 LC 129


>SB_32857| Best HMM Match : TolA (HMM E-Value=1.1)
          Length = 448

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = +3

Query: 360 QRAHLVPSRQSCLLRSSSTPALGSSGVCWREYLRQMSAHAVRCLSLA 500
           Q   +VP+R    L+S+ T  +G+  + W +Y +  +A     ++LA
Sbjct: 345 QSTPIVPARPRPALQSAQTVPIGTKSLSWEQYQQAKAAPKPTKMALA 391


>SB_15187| Best HMM Match : PilN (HMM E-Value=7.5)
          Length = 310

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +2

Query: 68  YTSCPKNFFCLLLANIKYRLKRNESLKLKTPTSVNA 175
           Y+S  +N+F +LLA      K++ +L LK  TS+ A
Sbjct: 7   YSSMQRNWFQILLARRNISSKKSLALALKIATSILA 42


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,441,405
Number of Sequences: 59808
Number of extensions: 259761
Number of successful extensions: 761
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 761
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1191330434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)