Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0134.Seq
         (532 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT004487-1|AAO42651.1|  371|Drosophila melanogaster LD23561p pro...    50   3e-06
BT001818-1|AAN71573.1|  329|Drosophila melanogaster RH40150p pro...    50   3e-06
AE014297-3413|AAN13961.1|  329|Drosophila melanogaster CG5854-PB...    50   3e-06
AE014297-3412|AAF56208.1|  371|Drosophila melanogaster CG5854-PA...    50   3e-06
BT022231-1|AAY54647.1|  133|Drosophila melanogaster IP12465p pro...    29   3.0  

>BT004487-1|AAO42651.1|  371|Drosophila melanogaster LD23561p
           protein.
          Length = 371

 Score = 49.6 bits (113), Expect = 3e-06
 Identities = 21/44 (47%), Positives = 28/44 (63%)
 Frame = -1

Query: 502 EANDKHLTAWADICRKYSLQHTPLEPSAGVELLLNKQLCLDGTK 371
           E NDKH+  WA+IC++  + +TPL P    E L +K L LD TK
Sbjct: 291 EINDKHMAPWAEICQRNGIDNTPLTPYLDEEQLQHKHLYLDNTK 334



 Score = 36.3 bits (80), Expect = 0.026
 Identities = 16/30 (53%), Positives = 19/30 (63%)
 Frame = -3

Query: 353 LDVPKPTAELFREVLEDYASMQLFPKELLL 264
           L  PK T EL  E++ DY   QLFPK L+L
Sbjct: 342 LQHPKVTRELLMEMINDYVKQQLFPKSLVL 371


>BT001818-1|AAN71573.1|  329|Drosophila melanogaster RH40150p
           protein.
          Length = 329

 Score = 49.6 bits (113), Expect = 3e-06
 Identities = 21/44 (47%), Positives = 28/44 (63%)
 Frame = -1

Query: 502 EANDKHLTAWADICRKYSLQHTPLEPSAGVELLLNKQLCLDGTK 371
           E NDKH+  WA+IC++  + +TPL P    E L +K L LD TK
Sbjct: 249 EINDKHMAPWAEICQRNGIDNTPLTPYLDEEQLQHKHLYLDNTK 292



 Score = 36.3 bits (80), Expect = 0.026
 Identities = 16/30 (53%), Positives = 19/30 (63%)
 Frame = -3

Query: 353 LDVPKPTAELFREVLEDYASMQLFPKELLL 264
           L  PK T EL  E++ DY   QLFPK L+L
Sbjct: 300 LQHPKVTRELLMEMINDYVKQQLFPKSLVL 329


>AE014297-3413|AAN13961.1|  329|Drosophila melanogaster CG5854-PB,
           isoform B protein.
          Length = 329

 Score = 49.6 bits (113), Expect = 3e-06
 Identities = 21/44 (47%), Positives = 28/44 (63%)
 Frame = -1

Query: 502 EANDKHLTAWADICRKYSLQHTPLEPSAGVELLLNKQLCLDGTK 371
           E NDKH+  WA+IC++  + +TPL P    E L +K L LD TK
Sbjct: 249 EINDKHMAPWAEICQRNGIDNTPLTPYLDEEQLQHKHLYLDNTK 292



 Score = 36.3 bits (80), Expect = 0.026
 Identities = 16/30 (53%), Positives = 19/30 (63%)
 Frame = -3

Query: 353 LDVPKPTAELFREVLEDYASMQLFPKELLL 264
           L  PK T EL  E++ DY   QLFPK L+L
Sbjct: 300 LQHPKVTRELLMEMINDYVKQQLFPKSLVL 329


>AE014297-3412|AAF56208.1|  371|Drosophila melanogaster CG5854-PA,
           isoform A protein.
          Length = 371

 Score = 49.6 bits (113), Expect = 3e-06
 Identities = 21/44 (47%), Positives = 28/44 (63%)
 Frame = -1

Query: 502 EANDKHLTAWADICRKYSLQHTPLEPSAGVELLLNKQLCLDGTK 371
           E NDKH+  WA+IC++  + +TPL P    E L +K L LD TK
Sbjct: 291 EINDKHMAPWAEICQRNGIDNTPLTPYLDEEQLQHKHLYLDNTK 334



 Score = 36.3 bits (80), Expect = 0.026
 Identities = 16/30 (53%), Positives = 19/30 (63%)
 Frame = -3

Query: 353 LDVPKPTAELFREVLEDYASMQLFPKELLL 264
           L  PK T EL  E++ DY   QLFPK L+L
Sbjct: 342 LQHPKVTRELLMEMINDYVKQQLFPKSLVL 371


>BT022231-1|AAY54647.1|  133|Drosophila melanogaster IP12465p
           protein.
          Length = 133

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 19/64 (29%), Positives = 29/64 (45%)
 Frame = +3

Query: 327 FGGRFGHVQLHQRAHLVPSRQSCLLRSSSTPALGSSGVCWREYLRQMSAHAVRCLSLASS 506
           F  +F  + L   A     R+SC  +S S+    S   CWR +L   SA    C+S   +
Sbjct: 9   FSSKFSAISLEMAA-----RRSCSAKSRSSSQ--SRRNCWRRFLSTNSARLRSCISCVIA 61

Query: 507 AQTL 518
           A ++
Sbjct: 62  ASSM 65


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,518,094
Number of Sequences: 53049
Number of extensions: 376070
Number of successful extensions: 946
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 946
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1991467008
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)