Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0134.Seq
         (532 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81485-4|CAB03978.1|  343|Caenorhabditis elegans Hypothetical pr...    27   6.3  
AF003130-4|AAB54126.1| 1043|Caenorhabditis elegans Hypothetical ...    27   6.3  
Z81477-1|CAB03931.1|  271|Caenorhabditis elegans Hypothetical pr...    27   8.4  
AF106578-1|AAC78197.1|  252|Caenorhabditis elegans Hypothetical ...    27   8.4  

>Z81485-4|CAB03978.1|  343|Caenorhabditis elegans Hypothetical
           protein C49F5.4 protein.
          Length = 343

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 3/32 (9%)
 Frame = -1

Query: 400 NKQLCL---DGTKCAR*CNWTCPNLPPNCSER 314
           +K+ C+   DGT C     WT P + PN   R
Sbjct: 195 SKKQCISFPDGTDCLPKTQWTVPKISPNLENR 226


>AF003130-4|AAB54126.1| 1043|Caenorhabditis elegans Hypothetical
           protein F55A12.8 protein.
          Length = 1043

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = -1

Query: 430 EPSAGVELLLNKQLCLDGTKCAR*CNWTCPNLPPNCSERF 311
           +P   +E  LN+ LCLD T C       C   PP   E +
Sbjct: 464 KPGDKIEKWLNRLLCLDATNCQ--LKLECGTPPPAACELY 501


>Z81477-1|CAB03931.1|  271|Caenorhabditis elegans Hypothetical
           protein C27C7.1 protein.
          Length = 271

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 17/37 (45%), Positives = 19/37 (51%)
 Frame = +3

Query: 318 SEQFGGRFGHVQLHQRAHLVPSRQSCLLRSSSTPALG 428
           S Q GGR  H  LH+R H+ PS Q      S  PA G
Sbjct: 64  SAQSGGRNAHKDLHER-HVHPS-QGYQRHGSKAPAHG 98


>AF106578-1|AAC78197.1|  252|Caenorhabditis elegans Hypothetical
           protein H11L12.1 protein.
          Length = 252

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 17/37 (45%), Positives = 19/37 (51%)
 Frame = +3

Query: 318 SEQFGGRFGHVQLHQRAHLVPSRQSCLLRSSSTPALG 428
           S Q GGR  H  LH+R H+ PS Q      S  PA G
Sbjct: 65  SAQSGGRNAHKDLHER-HVHPS-QGYQRHGSKAPAHG 99


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,213,487
Number of Sequences: 27780
Number of extensions: 197754
Number of successful extensions: 495
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 495
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1049512662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)