Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0134.Seq
         (532 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g49160.1 68418.m06085 DNA (cytosine-5-)-methyltransferase (AT...    29   1.5  
At2g07320.1 68415.m00839 SWIM zinc finger family protein contain...    29   1.5  
At2g47230.1 68415.m05898 agenet domain-containing protein contai...    27   7.9  
At2g35610.1 68415.m04365 expressed protein                             27   7.9  

>At5g49160.1 68418.m06085 DNA (cytosine-5-)-methyltransferase
           (ATHIM) identical to SP|P34881 DNA
           (cytosine-5)-methyltransferase AthI (EC 2.1.1.37)
           {Arabidopsis thaliana}
          Length = 1534

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = -1

Query: 508 AEEANDKHLTAWADICRKYSLQHTPLEPSAGVELLLNKQLCLDGT 374
           A +  D+H T W    +K SL+   L P AG+  + +K+  +  T
Sbjct: 584 ASKLEDRHHTKWIIKKKKISLKELNLNPRAGMAPVASKRKAMQAT 628


>At2g07320.1 68415.m00839 SWIM zinc finger family protein contains
           Pfam profile PF04434: SWIM zinc finger
          Length = 534

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = -1

Query: 484 LTAWADICRKYSLQHTPLEPSAGVELLLNKQLCLDGTKCAR*CNWT 347
           LT W    RK S++HT +      +++    + ++G+K     NWT
Sbjct: 84  LTRWCSARRKKSIKHTGMVQPYVDKVMAQTMMKMEGSKIQNVTNWT 129


>At2g47230.1 68415.m05898 agenet domain-containing protein contains
           Pfam PF05641: Agenet domain
          Length = 701

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = -1

Query: 526 DRHSVCAEEANDKHLTAWADICRKYSLQHTPL 431
           D  S+C  + +D+ L AW ++  + S+ H+P+
Sbjct: 461 DTSSIC-NDVDDQPLAAWINLPTETSIDHSPI 491


>At2g35610.1 68415.m04365 expressed protein
          Length = 644

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = -1

Query: 460 RKYSLQHTPLEPSAGVELLLNKQLCLDGTKCAR*CNWTCPN 338
           R+YS    PL P    E  L+ QLC +G +     N T P+
Sbjct: 507 REYSFLDNPLLPKQVKESWLDVQLCQEGKEGCEASNNTSPS 547


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,422,748
Number of Sequences: 28952
Number of extensions: 174242
Number of successful extensions: 390
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 390
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 987020800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)