Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0132.Seq
(745 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0039 - 319871-319914,320021-320084,320198-320263,320397-32... 56 3e-08
11_01_0040 - 304439-304482,304589-304652,304766-304831,305509-30... 52 4e-07
12_02_0911 + 24236374-24237582 31 1.3
03_05_0650 - 26423829-26424179,26424379-26424612,26424961-264252... 31 1.3
05_05_0221 - 23385626-23386702 29 2.9
03_02_0471 + 8734292-8734788,8735168-8735654,8735766-8736551 29 2.9
11_04_0319 - 16348349-16348591,16348818-16349066,16349827-16349832 29 3.9
02_05_0624 - 30451032-30451140,30451294-30451409,30451506-304515... 29 3.9
11_06_0707 + 26467214-26470309 28 6.8
11_06_0698 + 26385989-26389090 28 6.8
02_05_1329 - 35724567-35725255,35725626-35725682,35727667-35729050 28 9.0
01_03_0163 + 13346586-13347809 28 9.0
>12_01_0039 -
319871-319914,320021-320084,320198-320263,320397-320458,
321211-321298,321401-321461,321542-321625,322332-322630
Length = 255
Score = 56.0 bits (129), Expect = 3e-08
Identities = 33/80 (41%), Positives = 44/80 (55%), Gaps = 3/80 (3%)
Frame = +1
Query: 274 CYNMMRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLLM 453
C + +QI E AS Y ++ AYF D V GFAK F +++ EER+HA KL+ Y M
Sbjct: 91 CEAAISEQINVEFNASYAYHSLFAYFDRDNVALKGFAKFFKESSDEERDHAEKLMKYQNM 150
Query: 454 RG---KLTGSVTDLITYRAP 504
RG +L VT L + P
Sbjct: 151 RGGRVRLQSIVTPLTEFDHP 170
Score = 33.9 bits (74), Expect = 0.14
Identities = 19/65 (29%), Positives = 34/65 (52%)
Frame = +3
Query: 534 ALEHALKLESDVTNSIREVIKTCESSFNDYHLVDYLSGEFLDEQYKGQRDLAGKASTLKK 713
A+E AL LE V + + + S ND L D++ EFL+EQ + + ++ + L++
Sbjct: 178 AMELALALEKLVNEKLHN-LHSVASRCNDPQLTDFVESEFLEEQVEAIKKISEYVAQLRR 236
Query: 714 MMDKH 728
+ H
Sbjct: 237 VGKGH 241
>11_01_0040 -
304439-304482,304589-304652,304766-304831,305509-305640,
305744-305804,305885-306018,306310-306654
Length = 281
Score = 52.4 bits (120), Expect = 4e-07
Identities = 31/69 (44%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Frame = +1
Query: 307 EVAASIQYLAMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLLMRG---KLTGSV 477
E AS Y ++ AYF D V GFAK F +++ EER+HA KLI Y MRG +L V
Sbjct: 134 EYNASYAYHSLFAYFDRDNVALKGFAKFFKESSDEERDHAEKLIKYQNMRGGRVRLQSIV 193
Query: 478 TDLITYRAP 504
T L + P
Sbjct: 194 TPLTEFDHP 202
Score = 27.9 bits (59), Expect = 9.0
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = +3
Query: 606 SSFNDYHLVDYLSGEFLDEQYKGQRDLAGKASTLKKMMDKH 728
S ND L D++ EFL+EQ + + ++ + L+++ H
Sbjct: 227 SRCNDPQLTDFVESEFLEEQVEAIKKISEYVAQLRRVGKGH 267
>12_02_0911 + 24236374-24237582
Length = 402
Score = 30.7 bits (66), Expect = 1.3
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = +3
Query: 519 ESGASALEHA--LKLESDVTNSIREVIKTCESSFNDYHLVDYLSGEFLDEQYKGQRDL 686
++GA+A + A L+L+ S +EV +H+ D+LS +EQY G L
Sbjct: 169 DAGAAAPQEAALLQLQQQTPASCQEVFVRSHGEEYGFHVDDFLSDACSNEQYSGDSSL 226
>03_05_0650 -
26423829-26424179,26424379-26424612,26424961-26425236,
26425372-26425648,26425751-26425764,26425843-26425989,
26426306-26426366,26426570-26426604,26426688-26426882,
26428230-26428439,26428865-26428940,26429519-26429799
Length = 718
Score = 30.7 bits (66), Expect = 1.3
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = +3
Query: 543 HALKLESDVTNSIREVIK-TCESSFNDYHLVDYLSGEFLDEQYKGQRDLAGKASTLKK 713
H L V S +E I T ES F YH+ YLS + + + K Q+ + G KK
Sbjct: 141 HFTVLVRGVPKSTKESISCTVESFFTKYHVSSYLSHQIIYKVGKLQKIVTGAKKAYKK 198
>05_05_0221 - 23385626-23386702
Length = 358
Score = 29.5 bits (63), Expect = 2.9
Identities = 20/61 (32%), Positives = 27/61 (44%)
Frame = +3
Query: 225 TSAPSPSGMSAHHGADLLQHDEETDPGGSGRVNPVLSHGGLLLDRYGEPPRLREAILRCC 404
T+AP S ++ ++L+ E S V L HG L +G L ILRCC
Sbjct: 13 TAAPVASPAASSMASELMAQGRE-----SAAVLEALLHGASLPPAHGGAHALAAEILRCC 67
Query: 405 D 407
D
Sbjct: 68 D 68
>03_02_0471 + 8734292-8734788,8735168-8735654,8735766-8736551
Length = 589
Score = 29.5 bits (63), Expect = 2.9
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +3
Query: 525 GASALEHALKLESDVTNSIREVIKTCESSFNDYHLV 632
G LE+ +D+TN+ E I T SS ND+ LV
Sbjct: 381 GCPHLEYWAVHVTDITNAALEAIGTYSSSLNDFRLV 416
>11_04_0319 - 16348349-16348591,16348818-16349066,16349827-16349832
Length = 165
Score = 29.1 bits (62), Expect = 3.9
Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Frame = +3
Query: 228 SAPSPSG-MSAHHGADLLQHDEETDPGGSGRVNPVLSHGGLLLDRYGE 368
SAP PSG + HGA DP R + HGG + +G+
Sbjct: 51 SAPPPSGHRTPPHGAGSSTPQRNKDPASRPRSQSAVGHGGGSVPAWGQ 98
>02_05_0624 -
30451032-30451140,30451294-30451409,30451506-30451580,
30452033-30452093,30452198-30452424
Length = 195
Score = 29.1 bits (62), Expect = 3.9
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +1
Query: 334 AMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLL 450
A+ YF + TV P A FF + +RE T L+D LL
Sbjct: 115 ALPKYFQVGTVIEP--ASEFFSSRLTKRERKTTLVDELL 151
>11_06_0707 + 26467214-26470309
Length = 1031
Score = 28.3 bits (60), Expect = 6.8
Identities = 21/58 (36%), Positives = 27/58 (46%)
Frame = -2
Query: 510 CGGGPVRDEVGYGACQLAPHEQVVNELGRVLAFFSRSIEE*LREAGAVHRIDREVSPH 337
CGG P+ V A LA EQ NE R+L + S+ + RE + EV PH
Sbjct: 363 CGGLPLAIRVI--ATVLASQEQTENEWRRILGKNAWSMSKLPRELSGALYLSYEVLPH 418
>11_06_0698 + 26385989-26389090
Length = 1033
Score = 28.3 bits (60), Expect = 6.8
Identities = 21/58 (36%), Positives = 27/58 (46%)
Frame = -2
Query: 510 CGGGPVRDEVGYGACQLAPHEQVVNELGRVLAFFSRSIEE*LREAGAVHRIDREVSPH 337
CGG P+ V A LA EQ NE R+L + S+ + RE + EV PH
Sbjct: 363 CGGLPLAIRVI--ATVLASQEQTENEWRRILGKNAWSMSKLPRELSGALYLSYEVLPH 418
>02_05_1329 - 35724567-35725255,35725626-35725682,35727667-35729050
Length = 709
Score = 27.9 bits (59), Expect = 9.0
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = -2
Query: 300 DLFPHHVVASLLHGEHSSLMVTGLT*HCVAVAGARAATSPR 178
D +P+ + SLLHG H + ++T T AG+ + TS +
Sbjct: 449 DYYPNGSLFSLLHGSHQNPLLTRTTVCRCRQAGSSSRTSSK 489
>01_03_0163 + 13346586-13347809
Length = 407
Score = 27.9 bits (59), Expect = 9.0
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +3
Query: 243 SGMSAHHGADLLQHDEETDPGGSGRVNPVLSHGGL 347
+G+ G DL Q E PGGS V + HG L
Sbjct: 156 NGVDDDGGLDLQQQQEHVPPGGSDAVVVPVGHGVL 190
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,130,600
Number of Sequences: 37544
Number of extensions: 388385
Number of successful extensions: 1179
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1179
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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