Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0132.Seq
         (745 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    25   0.57 
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   4.0  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   7.0  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   9.2  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   9.2  

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 25.4 bits (53), Expect = 0.57
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +3

Query: 492 VQGPRHTSWESGASALEHALKLESDVTNSI 581
           ++ P   SW S  + +  A KL+ ++ NSI
Sbjct: 148 IRTPTEASWHSPEAHISVAQKLQKEIPNSI 177


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = -1

Query: 583 RMLLVTSLSSLRACSRADAPLSHDVWRG 500
           R+LL++++  +  CS  +  L  D++RG
Sbjct: 10  RILLISAVFCVGLCSEDEERLVRDLFRG 37


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = +2

Query: 2   ANRTYLFEFPANYKSPSTPVCVKA 73
           A RTYLF+   N      P  V A
Sbjct: 545 AGRTYLFDLDYNESEEQCPYTVDA 568


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 686 RRQGLDPQEDDGQARRPRRV 745
           R+Q +DP   + Q  R RRV
Sbjct: 96  RKQTIDPLSSNTQITRKRRV 115


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +2

Query: 539 RARPQAGE*RHQQHPGGHQDLREQLQRLPPG 631
           +A+PQ  + + QQ P   Q  ++Q Q+   G
Sbjct: 827 QAQPQQQQQQQQQQPQQQQQQQQQQQQQQRG 857


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,111
Number of Sequences: 438
Number of extensions: 3296
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23266665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)