Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0129.Seq
         (695 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces...    26   4.5  
SPCC645.12c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    26   4.5  
SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter Itr1|Schizo...    26   5.9  
SPCC320.10 |srp72||signal recognition particle subunit Srp72|Sch...    26   5.9  
SPAC19B12.10 |sst2||human AMSH protein homolog|Schizosaccharomyc...    26   5.9  
SPBC3H7.08c |||conserved fungal protein|Schizosaccharomyces pomb...    25   7.8  

>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1441

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -1

Query: 365 VSHIHHDQQ*QSGVIFVLHYIDFLAAQVCCQTHTKSVGPVTP 240
           VS +  D Q QS V   LHY + + +   C +HT +   V P
Sbjct: 130 VSTLEWDMQSQSFVTNSLHYYEDVKSSNICSSHTPTQLLVDP 171


>SPCC645.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 198

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 402 KEVEATENEWNEGRNQTVKALEDAIEGEKTEQ 497
           K  E  E EWN+ +N+     E+A+E E T Q
Sbjct: 85  KNKELIEEEWNDFQNEIGIIEENAVEQEITLQ 116


>SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter
           Itr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 575

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 16/57 (28%), Positives = 27/57 (47%)
 Frame = +3

Query: 261 FGVGLATYLCSKEIYVMEHEYYSGLSLLVMVYVAHVKFGPKLAAWLDKEVEATENEW 431
           +GVG+A+ +    +Y+ E         LV++YV  +  G  +A  +D   E   N W
Sbjct: 192 WGVGIASLIIP--LYLSEIAPSKIRGRLVIIYVLLITAGQVIAYGIDTAFEHVHNGW 246


>SPCC320.10 |srp72||signal recognition particle subunit
           Srp72|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 561

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = -1

Query: 110 RLVLCTRSVCSHLNAKPRATTL 45
           +L+LCTRS+ +HL+ +   +T+
Sbjct: 408 KLLLCTRSLLAHLDERAPVSTI 429


>SPAC19B12.10 |sst2||human AMSH protein homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 435

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +3

Query: 225 LPLENWCDGSYTFGVGLATYLCSKEIYVMEHEYYSGLSLL 344
           +PL+NW   S T             +YV EH+Y +G+ LL
Sbjct: 29  IPLKNWLRTSTTISK-------QAHVYVSEHDYSNGVFLL 61


>SPBC3H7.08c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 120

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 240 WCDGSYTFGVGLATYLCSKEIYVMEHE 320
           WC  +YTFGV  A Y+  +   +++HE
Sbjct: 26  WCVMTYTFGV--AGYMLGQRGLLVQHE 50


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,809,866
Number of Sequences: 5004
Number of extensions: 58064
Number of successful extensions: 183
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)