Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0129.Seq
(695 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0095 + 20833313-20835073 31 0.87
09_04_0197 - 15522167-15523524,15525416-15525683 30 1.5
03_05_0088 + 20664580-20664696,20664796-20665218,20665297-206655... 29 2.7
09_06_0225 - 21670861-21670887,21671340-21672021,21672041-21672852 29 4.7
05_07_0195 - 28331445-28331641,28331841-28331934,28332019-283320... 29 4.7
07_03_1564 + 27749899-27750166,27750431-27750507,27750923-277509... 28 6.2
05_05_0254 - 23638544-23640090,23640280-23640408,23640619-236406... 28 6.2
05_01_0495 - 4136871-4136906,4137043-4137171,4137545-4137694,413... 28 6.2
03_06_0309 - 33039006-33039184,33039753-33039912 28 6.2
02_03_0109 - 15333228-15334793,15335255-15335392,15335496-153357... 28 6.2
09_03_0042 + 11842263-11842698,11842799-11842896,11843082-118432... 28 8.1
08_02_1473 - 27358162-27358275,27358968-27359024,27359102-273592... 28 8.1
07_03_1575 - 27848977-27849095,27849254-27849302,27850270-278502... 28 8.1
03_05_0881 + 28461857-28462263,28462357-28462435,28462798-284629... 28 8.1
01_01_0292 - 2387653-2387711,2388061-2388684,2388814-2389104,238... 28 8.1
>09_06_0095 + 20833313-20835073
Length = 586
Score = 31.1 bits (67), Expect = 0.87
Identities = 16/58 (27%), Positives = 30/58 (51%)
Frame = +2
Query: 512 QELLIQAKKENVLLQLEAAYRERLMYAYSEVKRRLDYQLEKSNVERRLAQKHMVDWIV 685
+EL +QA+KE +EAA + A +++ R Q K + +R +HM ++ +
Sbjct: 324 RELKVQARKEAEKFWIEAAATAKKAQALQDLEERYKQQFIKPSYDREDISEHMQEYFL 381
>09_04_0197 - 15522167-15523524,15525416-15525683
Length = 541
Score = 30.3 bits (65), Expect = 1.5
Identities = 11/20 (55%), Positives = 17/20 (85%)
Frame = +1
Query: 394 GWTRKLKRPRTNGTKVGTKP 453
G++++L RPR+NGT + TKP
Sbjct: 416 GFSQRLTRPRSNGTYLSTKP 435
>03_05_0088 +
20664580-20664696,20664796-20665218,20665297-20665518,
20665597-20666058,20666140-20666300,20666422-20666973,
20667056-20667125,20667141-20667226,20667306-20667673,
20668002-20668018
Length = 825
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +1
Query: 52 VARGFAFRCEQTDRVHSTSRTGLRLRCSNTRPENLCSPCKGEPGKVRL 195
VA G AF+ TD+VHS + S ++ C P + P K +L
Sbjct: 427 VAEGMAFKPSVTDKVHSADLLAGYAKVSIDTVKDTCRPTELTPPKSKL 474
>09_06_0225 - 21670861-21670887,21671340-21672021,21672041-21672852
Length = 506
Score = 28.7 bits (61), Expect = 4.7
Identities = 15/59 (25%), Positives = 30/59 (50%)
Frame = +2
Query: 515 ELLIQAKKENVLLQLEAAYRERLMYAYSEVKRRLDYQLEKSNVERRLAQKHMVDWIVSN 691
EL +QA+KE +E A E+ A +++ R Q K R+ +H+ ++ +++
Sbjct: 324 ELKVQARKEAEKFWIEEAATEKKTQALQDMEERFKQQFIKLGYARKGIPEHIQEYYLTD 382
>05_07_0195 -
28331445-28331641,28331841-28331934,28332019-28332099,
28332186-28332234,28332334-28332419,28332513-28332740,
28332819-28332857,28332958-28333047,28333207-28333269,
28333371-28333449,28333539-28333585,28333668-28333730,
28333814-28333864,28333977-28334060,28334162-28334226,
28334559-28334676,28334775-28334825,28335228-28335314,
28335633-28335712,28336676-28336793
Length = 589
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 266 CGSGNIPVQQGNLCNGARILLRTVTAGH 349
CG + PV++GN CNGA + GH
Sbjct: 542 CGVVSSPVRRGNYCNGATKQQKLYQNGH 569
>07_03_1564 +
27749899-27750166,27750431-27750507,27750923-27750950,
27751117-27751261,27751351-27751429,27751515-27751633,
27751732-27752073,27754807-27754896,27755730-27755955,
27756398-27756784,27757176-27757496
Length = 693
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/39 (38%), Positives = 17/39 (43%)
Frame = -3
Query: 357 HTP*PAVTVRSNIRAPLHRFPCCTGMLPDPHQKCRTRHT 241
H+P P V N+R L C M P HQ C HT
Sbjct: 427 HSPKPNAMVSGNVRELLECPVCLNAMYPPIHQ-CSNGHT 464
>05_05_0254 - 23638544-23640090,23640280-23640408,23640619-23640626,
23641442-23642682
Length = 974
Score = 28.3 bits (60), Expect = 6.2
Identities = 21/56 (37%), Positives = 26/56 (46%)
Frame = +1
Query: 517 APHPGQEGERAPAARGRLQGEAHVRLLRGEAASGLPAREVERGASSRPEAHGRLDS 684
A HPG E GRL GE V + R P R+ R +S PEA R+D+
Sbjct: 903 ARHPGFEEGVYFLDDGRLYGE--VAMFRDPNLRQYPCRDSGRWLASAPEAVPRVDN 956
>05_01_0495 -
4136871-4136906,4137043-4137171,4137545-4137694,
4137782-4137847,4138124-4138168,4139022-4139102,
4139202-4139283,4139571-4139642,4140473-4140573,
4140690-4140806,4140929-4141249
Length = 399
Score = 28.3 bits (60), Expect = 6.2
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +3
Query: 201 YS*RMVPILPLENWCDGS 254
Y+ RM PI+P+ENW GS
Sbjct: 213 YNPRMDPIIPVENWRKGS 230
>03_06_0309 - 33039006-33039184,33039753-33039912
Length = 112
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -3
Query: 423 SRSLQLPCPTKQPILVRISREPHTP*PAVTVRSNIR 316
+RS+ LP P +P + PH P AV R +R
Sbjct: 11 ARSMALPIPLARPPPLATVARPHPPQDAVQARDGVR 46
>02_03_0109 -
15333228-15334793,15335255-15335392,15335496-15335771,
15336357-15336422,15338140-15338487
Length = 797
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +2
Query: 71 SGASKQTACTALVARGSASDVATHDQKTFAR 163
+ A K AC ALV+RG A+D + + AR
Sbjct: 630 AAAGKLEACRALVSRGGAADAGSETALSVAR 660
>09_03_0042 +
11842263-11842698,11842799-11842896,11843082-11843217,
11843349-11843509,11843603-11843753,11843855-11843952,
11844142-11844277,11844404-11844532,11844622-11844720,
11844814-11844909,11845002-11845100,11845201-11845296,
11846394-11846628,11846752-11846873,11846993-11847114,
11847275-11847345,11847940-11848027,11848374-11848439,
11848676-11848795
Length = 852
Score = 27.9 bits (59), Expect = 8.1
Identities = 19/65 (29%), Positives = 30/65 (46%)
Frame = +2
Query: 2 RSSHFGNNL*NIR*IMLSRVALRSGASKQTACTALVARGSASDVATHDQKTFARPVRVSQ 181
R SH L R +L+ + L + + + CT L + S S T+D +T RP
Sbjct: 608 RMSHCATQL---RASVLACLNLETLQPRNSICTTLQSELSGSAHPTYDHQTVMRPTTFDS 664
Query: 182 AKLDL 196
+LD+
Sbjct: 665 LELDM 669
>08_02_1473 -
27358162-27358275,27358968-27359024,27359102-27359245,
27359770-27359934,27360020-27360208,27360301-27360535,
27360826-27360932,27361020-27361103,27361185-27361695,
27361793-27361854,27363373-27363456
Length = 583
Score = 27.9 bits (59), Expect = 8.1
Identities = 19/61 (31%), Positives = 33/61 (54%)
Frame = +2
Query: 473 NRGREDGAVARAGQELLIQAKKENVLLQLEAAYRERLMYAYSEVKRRLDYQLEKSNVERR 652
+RGR+D +ARA L A++E VL Q+ A + +S++ + D + VER+
Sbjct: 230 SRGRDDDEIARAVSMSLETAEQERVLRQVGAHVSD-----HSDLSDKEDIEGATGTVERQ 284
Query: 653 L 655
+
Sbjct: 285 V 285
>07_03_1575 -
27848977-27849095,27849254-27849302,27850270-27850287,
27850798-27851786,27852119-27852733,27852893-27852921,
27853990-27854453,27854530-27854654,27854743-27855025,
27855112-27856102,27856965-27857576,27857666-27858630
Length = 1752
Score = 27.9 bits (59), Expect = 8.1
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = +1
Query: 526 PGQEGERAPAARGRLQGEAHVRLLRGEAASGL-PAREVERGASSRPEA 666
PG E P R Q +A R+ EAA+ + A E E A++ EA
Sbjct: 145 PGPESSGKPLRRSARQAKAAARVAEMEAAAAVAAAAEAEAAAAAMAEA 192
>03_05_0881 +
28461857-28462263,28462357-28462435,28462798-28462920,
28463632-28463748,28463861-28463917
Length = 260
Score = 27.9 bits (59), Expect = 8.1
Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +2
Query: 68 RSGAS-KQTACTALVARGSASDVATHDQKTFARPVRVSQAKLDLALFLKNGSNSSTR 235
+SGA K+ A LVA SA D+A D T P+R+ A L+ ++F NS R
Sbjct: 142 KSGAERKEAAENTLVAYKSAQDIALADLPT-THPIRLGLA-LNFSVFYYEILNSPDR 196
>01_01_0292 -
2387653-2387711,2388061-2388684,2388814-2389104,
2389338-2389390,2390496-2390968,2391090-2391432,
2391793-2391911,2392081-2392512,2392657-2392747,
2392833-2392942,2393681-2393875,2394581-2394622,
2395144-2395268,2395856-2395926,2396047-2396147
Length = 1042
Score = 27.9 bits (59), Expect = 8.1
Identities = 18/56 (32%), Positives = 29/56 (51%)
Frame = +2
Query: 452 RESTGGRNRGREDGAVARAGQELLIQAKKENVLLQLEAAYRERLMYAYSEVKRRLD 619
+ +T GR R ++ RA +E L + ++E L+ Y E L YSE+ R+D
Sbjct: 400 KTTTEGRMRAKQ----RRAEEEALREKQEEERRLENPELYLEELRARYSELSDRVD 451
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,848,629
Number of Sequences: 37544
Number of extensions: 439878
Number of successful extensions: 1545
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1544
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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