Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0129.Seq
         (695 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55341| Best HMM Match : Mt_ATP-synt_B (HMM E-Value=0.0013)          50   1e-06
SB_9823| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.1  
SB_1297| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.7  
SB_29012| Best HMM Match : Avirulence (HMM E-Value=1.1)                29   3.6  
SB_39450| Best HMM Match : Picorna_P3A (HMM E-Value=4.8)               29   4.8  
SB_21966| Best HMM Match : DnaJ (HMM E-Value=5.30001e-40)              29   4.8  
SB_36009| Best HMM Match : Collagen (HMM E-Value=0)                    28   6.3  
SB_36389| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  
SB_5689| Best HMM Match : Ribosomal_L34e (HMM E-Value=0.34)            28   8.3  
SB_47139| Best HMM Match : Ion_trans_2 (HMM E-Value=0.62)              28   8.3  
SB_43575| Best HMM Match : Sina (HMM E-Value=0)                        28   8.3  

>SB_55341| Best HMM Match : Mt_ATP-synt_B (HMM E-Value=0.0013)
          Length = 185

 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 29/80 (36%), Positives = 40/80 (50%)
 Frame = +3

Query: 249 GSYTFGVGLATYLCSKEIYVMEHEYYSGLSLLVMVYVAHVKFGPKLAAWLDKEVEATENE 428
           G   F  GLA YL S EI ++  E Y    +    Y    K G  +A  LD   +   + 
Sbjct: 72  GQLMFFGGLAAYLLSNEILIIHEETYIAAVMGGTFYWLMKKAGGPIAEMLDNTSQEILDA 131

Query: 429 WNEGRNQTVKALEDAIEGEK 488
           +N GRN ++K L+DAI+ EK
Sbjct: 132 FNVGRNASIKHLQDAIDNEK 151


>SB_9823| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1329

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 17/51 (33%), Positives = 29/51 (56%)
 Frame = +2

Query: 71  SGASKQTACTALVARGSASDVATHDQKTFARPVRVSQAKLDLALFLKNGSN 223
           S +SKQ  CT + + G AS V T+  K  +R ++++ A L+     K G++
Sbjct: 829 SKSSKQPCCTVVDSHGKASVVLTYG-KLLSRSIKIAYALLNKVGSHKEGTS 878


>SB_1297| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 162

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
 Frame = -3

Query: 207 RNKAKSNFAW---LTLT---GRAKVFWSCVATSEAEPRATSAVHAVCLLAPERKATRDNI 46
           R+ AK N AW   L+ T    +  + W C+  S     A   +   C+L+P R   +DNI
Sbjct: 50  RHGAKDNLAWKCMLSFTRHGAKDNLAWKCMH-SHTRHGAKDNMAWKCMLSPTRHGAKDNI 108

Query: 45  IYR 37
            ++
Sbjct: 109 AWK 111


>SB_29012| Best HMM Match : Avirulence (HMM E-Value=1.1)
          Length = 444

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +1

Query: 70  FRCEQTDRVHSTSRTGLRLRCSNTRPENLCS 162
           +RC  TD  H T  T   +R   T P+ LC+
Sbjct: 2   YRCHTTDCAHCTDFTRQTVRTVQTPPDRLCA 32



 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +1

Query: 70  FRCEQTDRVHSTSRTGLRLRCSNTRPENLCS 162
           +R  QTD  H T  T   LR   T P+ LC+
Sbjct: 194 YRHHQTDCAHCTDFTRQTLRIVQTPPDRLCA 224


>SB_39450| Best HMM Match : Picorna_P3A (HMM E-Value=4.8)
          Length = 284

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 24/94 (25%), Positives = 40/94 (42%), Gaps = 2/94 (2%)
 Frame = -1

Query: 329 GVIFVLHYIDFLAAQVCCQTHTKSVGPVTPVFEWKNWNHSSGIKP-SLTLPGSPLQGEQR 153
           G + V   + +    VC     K +     V EW    H + IKP  +     PL+ E +
Sbjct: 121 GAVTVEDLLIYTRWLVCYMHSVKRMHSFLRVIEWLPVMHKNTIKPQEIEKDEPPLEVESK 180

Query: 152 FSGRVLLHRRRSPVRLVLCTRSVCSHLNA-KPRA 54
            SG     R R  ++ ++   ++ +HLN  +P A
Sbjct: 181 PSGPP--SRARGNLKRIMSQVAITAHLNVLRPMA 212


>SB_21966| Best HMM Match : DnaJ (HMM E-Value=5.30001e-40)
          Length = 351

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 14/24 (58%), Positives = 17/24 (70%)
 Frame = -2

Query: 388 ANFGPNFT*ATYTMTSSDSPE*YS 317
           ANFGP FT  T+T TS D+ E +S
Sbjct: 89  ANFGPGFT--TFTYTSGDARETFS 110


>SB_36009| Best HMM Match : Collagen (HMM E-Value=0)
          Length = 687

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 17/54 (31%), Positives = 21/54 (38%), Gaps = 1/54 (1%)
 Frame = +1

Query: 526 PGQEGERAPAARGRLQGE-AHVRLLRGEAASGLPAREVERGASSRPEAHGRLDS 684
           PG +GER P      QGE  H      + A G+P  +   G    P   G   S
Sbjct: 432 PGAQGERGPRGEQGKQGEKGHAGEGGADGAPGIPGEQGPMGPVGAPGPVGNAGS 485


>SB_36389| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 361

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +1

Query: 253 PTLLVWVWQHTCAARKSM*WSTNITPDCHCWSW 351
           P  ++W+W    AA KS  +  ++   CH W++
Sbjct: 254 PNNVMWLWLDFGAADKSFKYFWDVVAFCHVWTF 286


>SB_5689| Best HMM Match : Ribosomal_L34e (HMM E-Value=0.34)
          Length = 524

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +1

Query: 28  IKYTINNVVARGFA-FRCEQTDRVHSTSRTGLRLRCSNTRPENLCS 162
           I YT+     R  A +R  QTD  H T  T   +R   T P+ LC+
Sbjct: 14  IVYTVQTSPDRLCALYRHHQTDCAHCTVTTRQTVRTVQTPPDRLCA 59


>SB_47139| Best HMM Match : Ion_trans_2 (HMM E-Value=0.62)
          Length = 116

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = -1

Query: 131 HRRRSPVRLVLCT--RSVCSHLNAKPRATTLFIVYF 30
           HRRR P  ++L +  R  C+ +N+K  AT L  +Y+
Sbjct: 58  HRRRRPAAILLQSYWRMYCADINSKSVATWLPHIYY 93


>SB_43575| Best HMM Match : Sina (HMM E-Value=0)
          Length = 432

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = +1

Query: 124 LRCSNTRPENLCSP-CKGEPGKVR 192
           L CSN RP+  C P C+G  G +R
Sbjct: 56  LVCSNCRPKLTCCPTCRGPLGSIR 79


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,287,472
Number of Sequences: 59808
Number of extensions: 491082
Number of successful extensions: 1478
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1297
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1477
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)