Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0129.Seq
(695 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U53340-6|AAA96210.1| 305|Caenorhabditis elegans Atp synthase b ... 43 2e-04
Z46242-8|CAA86329.1| 301|Caenorhabditis elegans Hypothetical pr... 40 0.002
Z79639-1|CAB01916.1| 2948|Caenorhabditis elegans Hypothetical pr... 32 0.34
U00036-15|AAK29857.1| 731|Caenorhabditis elegans Hypothetical p... 32 0.45
AF143148-1|AAD37914.1| 315|Caenorhabditis elegans R151.8B prote... 32 0.45
Z81593-12|CAB04744.1| 1274|Caenorhabditis elegans Hypothetical p... 31 0.60
AL023822-2|CAA19440.1| 1274|Caenorhabditis elegans Hypothetical ... 31 0.60
U97191-3|AAB52430.2| 133|Caenorhabditis elegans Hypothetical pr... 31 0.79
Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen... 29 4.2
Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen... 29 4.2
U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein ... 29 4.2
U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein ... 29 4.2
U29096-4|AAA68408.1| 1599|Caenorhabditis elegans Hypothetical pr... 29 4.2
U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV) coll... 29 4.2
AC006761-3|AAL32244.2| 860|Caenorhabditis elegans Hypothetical ... 29 4.2
AL023845-6|CAA19536.1| 168|Caenorhabditis elegans Hypothetical ... 28 5.5
AL022716-5|CAB97232.1| 291|Caenorhabditis elegans Hypothetical ... 28 5.5
Z32681-1|CAA83608.1| 761|Caenorhabditis elegans Hypothetical pr... 27 9.7
U21322-6|AAN65314.2| 669|Caenorhabditis elegans Hypothetical pr... 27 9.7
U21322-5|AAA62539.1| 1223|Caenorhabditis elegans Hypothetical pr... 27 9.7
>U53340-6|AAA96210.1| 305|Caenorhabditis elegans Atp synthase b
homolog protein 2 protein.
Length = 305
Score = 42.7 bits (96), Expect = 2e-04
Identities = 21/55 (38%), Positives = 34/55 (61%)
Frame = +2
Query: 530 AKKENVLLQLEAAYRERLMYAYSEVKRRLDYQLEKSNVERRLAQKHMVDWIVSNV 694
A KE++ LQLEA YR+ + +E+KRR+DY E + R+ ++ ++ I S V
Sbjct: 223 ALKESMALQLEATYRKNVQSVATELKRRIDYLKETEESKARVEREQLLKLINSEV 277
Score = 32.3 bits (70), Expect = 0.34
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +1
Query: 178 PGKVRLGFIPEEWFQFFHSKTGVTGPTL 261
P K RL +P+ WF F TGV+GP L
Sbjct: 104 PPKSRLLMMPDSWFTPFQKVTGVSGPYL 131
>Z46242-8|CAA86329.1| 301|Caenorhabditis elegans Hypothetical
protein F35G12.10 protein.
Length = 301
Score = 39.9 bits (89), Expect = 0.002
Identities = 23/81 (28%), Positives = 42/81 (51%)
Frame = +2
Query: 452 RESTGGRNRGREDGAVARAGQELLIQAKKENVLLQLEAAYRERLMYAYSEVKRRLDYQLE 631
+E+ R A A +E + + K+++ LQLEAAYR+ + +E+KRR++Y E
Sbjct: 195 KEAVDFRKTSAAQTASFAALKEGMPTSLKDSMQLQLEAAYRKNVQTISNEIKRRIEYLKE 254
Query: 632 KSNVERRLAQKHMVDWIVSNV 694
+ R + ++ I +V
Sbjct: 255 TEETKARFERDQLLKLINDSV 275
Score = 32.3 bits (70), Expect = 0.34
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 178 PGKVRLGFIPEEWFQFFHSKTGVTGPTL 261
P K RL +P+ WF F TG +GP L
Sbjct: 102 PPKTRLLMMPDSWFTAFQKVTGTSGPYL 129
Score = 28.3 bits (60), Expect = 5.5
Identities = 15/55 (27%), Positives = 28/55 (50%)
Frame = +3
Query: 249 GSYTFGVGLATYLCSKEIYVMEHEYYSGLSLLVMVYVAHVKFGPKLAAWLDKEVE 413
G Y F GL +L +KE++V E + + + ++ + G K+ A L K+ +
Sbjct: 126 GPYLFFGGLFAFLVNKELWVFEEQGHMTVGWILFYLLVSRTAGYKIDAGLYKDYQ 180
>Z79639-1|CAB01916.1| 2948|Caenorhabditis elegans Hypothetical protein
F54E4.1 protein.
Length = 2948
Score = 32.3 bits (70), Expect = 0.34
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = -1
Query: 263 KSVGPVTP-VFEWKNWNHSSGIKPS-LTLPGSPLQGEQRFSGRV 138
K+ PV+P FEW+ WN S PS L + GS ++ SGR+
Sbjct: 948 KATDPVSPNKFEWREWNMISDNHPSELGVEGSIVKVNAAHSGRI 991
>U00036-15|AAK29857.1| 731|Caenorhabditis elegans Hypothetical
protein R151.8 protein.
Length = 731
Score = 31.9 bits (69), Expect = 0.45
Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Frame = -3
Query: 429 IRSRSLQLPCP-TKQPILVRISREPHTP*PAVTVRSNIRAPLHRFPCCTGMLPD 271
+R R LQ P P T + + +EP T T I P P CT +L D
Sbjct: 26 LRERPLQSPAPITSTSLTSGLDKEPQTSTDNTTTNGEILNPSSSEPTCTSVLSD 79
>AF143148-1|AAD37914.1| 315|Caenorhabditis elegans R151.8B protein
protein.
Length = 315
Score = 31.9 bits (69), Expect = 0.45
Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Frame = -3
Query: 429 IRSRSLQLPCP-TKQPILVRISREPHTP*PAVTVRSNIRAPLHRFPCCTGMLPD 271
+R R LQ P P T + + +EP T T I P P CT +L D
Sbjct: 26 LRERPLQSPAPITSTSLTSGLDKEPQTSTDNTTTNGEILNPSSSEPTCTSVLSD 79
>Z81593-12|CAB04744.1| 1274|Caenorhabditis elegans Hypothetical
protein Y102A5A.1 protein.
Length = 1274
Score = 31.5 bits (68), Expect = 0.60
Identities = 17/47 (36%), Positives = 26/47 (55%)
Frame = -3
Query: 291 CTGMLPDPHQKCRTRHTSFRVEELEPFFRNKAKSNFAWLTLTGRAKV 151
C G+L P K +T H + VEEL P +KA+ + +LT +A +
Sbjct: 69 CIGLLAQP-SKIKTHHLEYLVEELTPHVFSKAEQSRDIHSLTLKAMI 114
>AL023822-2|CAA19440.1| 1274|Caenorhabditis elegans Hypothetical
protein Y102A5A.1 protein.
Length = 1274
Score = 31.5 bits (68), Expect = 0.60
Identities = 17/47 (36%), Positives = 26/47 (55%)
Frame = -3
Query: 291 CTGMLPDPHQKCRTRHTSFRVEELEPFFRNKAKSNFAWLTLTGRAKV 151
C G+L P K +T H + VEEL P +KA+ + +LT +A +
Sbjct: 69 CIGLLAQP-SKIKTHHLEYLVEELTPHVFSKAEQSRDIHSLTLKAMI 114
>U97191-3|AAB52430.2| 133|Caenorhabditis elegans Hypothetical
protein F53F10.3 protein.
Length = 133
Score = 31.1 bits (67), Expect = 0.79
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -1
Query: 296 LAAQVCCQTHTKSVGPVTPVFEWKNWNHSSGIK 198
L Q C+ K V PV P F WNH++G K
Sbjct: 6 LLYQALCKAGDKFVYPVLPAFAKPAWNHAAGPK 38
>Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1759
Score = 28.7 bits (61), Expect = 4.2
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Frame = +1
Query: 526 PGQEGERAPAARGRLQGEAHV---RLLRG-EAASGLPAREVERGASSRP 660
PG++GE PAAR +G+A + LRG + SGLP +G + P
Sbjct: 1021 PGEKGEAGPAARDGQKGDAGLPGQPGLRGPQGPSGLPGVPGFKGETGLP 1069
>Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1758
Score = 28.7 bits (61), Expect = 4.2
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Frame = +1
Query: 526 PGQEGERAPAARGRLQGEAHV---RLLRG-EAASGLPAREVERGASSRP 660
PG++GE PAAR +G+A + LRG + SGLP +G + P
Sbjct: 1020 PGEKGEAGPAARDGQKGDAGLPGQPGLRGPQGPSGLPGVPGFKGETGLP 1068
>U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein 2,
isoform a protein.
Length = 1758
Score = 28.7 bits (61), Expect = 4.2
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Frame = +1
Query: 526 PGQEGERAPAARGRLQGEAHV---RLLRG-EAASGLPAREVERGASSRP 660
PG++GE PAAR +G+A + LRG + SGLP +G + P
Sbjct: 1020 PGEKGEAGPAARDGQKGDAGLPGQPGLRGPQGPSGLPGVPGFKGETGLP 1068
>U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein 2,
isoform b protein.
Length = 1759
Score = 28.7 bits (61), Expect = 4.2
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Frame = +1
Query: 526 PGQEGERAPAARGRLQGEAHV---RLLRG-EAASGLPAREVERGASSRP 660
PG++GE PAAR +G+A + LRG + SGLP +G + P
Sbjct: 1021 PGEKGEAGPAARDGQKGDAGLPGQPGLRGPQGPSGLPGVPGFKGETGLP 1069
>U29096-4|AAA68408.1| 1599|Caenorhabditis elegans Hypothetical protein
F30H5.3 protein.
Length = 1599
Score = 28.7 bits (61), Expect = 4.2
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -1
Query: 290 AQVCCQTHTKSVGPVTP 240
AQ+CC T+ + VGP TP
Sbjct: 1192 AQLCCTTNDEPVGPTTP 1208
>U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV) collagen
protein.
Length = 1795
Score = 28.7 bits (61), Expect = 4.2
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Frame = +1
Query: 526 PGQEGERAPAARGRLQGEAHV---RLLRG-EAASGLPAREVERGASSRP 660
PG++GE PAAR +G+A + LRG + SGLP +G + P
Sbjct: 1057 PGEKGEAGPAARDGQKGDAGLPGQPGLRGPQGPSGLPGVPGFKGETGLP 1105
>AC006761-3|AAL32244.2| 860|Caenorhabditis elegans Hypothetical
protein Y41G9A.4b protein.
Length = 860
Score = 28.7 bits (61), Expect = 4.2
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = +2
Query: 491 GAVARAGQELLIQAKKENVLLQLEAAYRERLMYAYSEVKRRLDYQLEKSNVERRLAQ 661
G +++ Q+ KKEN LQ++ +ER ++ E K RL+ + S E AQ
Sbjct: 748 GVMSKVDQKRYDMLKKENETLQIQIEEKERKIH---ECKERLEELTKNSETEDMNAQ 801
>AL023845-6|CAA19536.1| 168|Caenorhabditis elegans Hypothetical
protein Y51B9A.8 protein.
Length = 168
Score = 28.3 bits (60), Expect = 5.5
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +2
Query: 266 CGSGNIPVQQGNLCNGARILLRTVTAGHGVCG 361
C +GN V G+ C A+++ T+T G+ G
Sbjct: 36 CPAGNTEVSSGDCCPTAQVVNGTITCNGGLVG 67
>AL022716-5|CAB97232.1| 291|Caenorhabditis elegans Hypothetical
protein C24F3.6 protein.
Length = 291
Score = 28.3 bits (60), Expect = 5.5
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Frame = +1
Query: 514 GAP-HPGQEGERAPAARGRLQGEAHVRLLRGEAAS-GLPAREVERGASSRPEAHGR 675
G P PGQ G+R PA G + +G + G P R+ + G +P GR
Sbjct: 211 GEPGQPGQPGQRGPAGEPGKDGSPGGQGEKGASGEPGQPGRDGQPGHPGQPGKDGR 266
>Z32681-1|CAA83608.1| 761|Caenorhabditis elegans Hypothetical
protein F56F3.1 protein.
Length = 761
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +1
Query: 127 RCSNTRPENLCSPCKGEPGKVRLGFIPEEWFQ 222
+ S TRPENL GE GK F P +W +
Sbjct: 43 KASMTRPENLSEDFNGEDGK----FSPLKWLE 70
>U21322-6|AAN65314.2| 669|Caenorhabditis elegans Hypothetical
protein K10D2.1b protein.
Length = 669
Score = 27.5 bits (58), Expect = 9.7
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = -3
Query: 444 SDLRSIRSRSLQLPCPTKQPILVRISREP 358
SD+ S+R++ ++P T QP+L ++P
Sbjct: 541 SDIESVRNKKRKVPATTSQPMLALDLKKP 569
>U21322-5|AAA62539.1| 1223|Caenorhabditis elegans Hypothetical
protein K10D2.1a protein.
Length = 1223
Score = 27.5 bits (58), Expect = 9.7
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = -3
Query: 444 SDLRSIRSRSLQLPCPTKQPILVRISREP 358
SD+ S+R++ ++P T QP+L ++P
Sbjct: 829 SDIESVRNKKRKVPATTSQPMLALDLKKP 857
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,065,833
Number of Sequences: 27780
Number of extensions: 347635
Number of successful extensions: 1104
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1040
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1104
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -