Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0129.Seq
         (695 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   2.8  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    23   3.7  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   4.8  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    22   4.8  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   4.8  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   8.5  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   8.5  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   8.5  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 10/37 (27%), Positives = 16/37 (43%)
 Frame = +1

Query: 79  EQTDRVHSTSRTGLRLRCSNTRPENLCSPCKGEPGKV 189
           EQT   H  ++  +       RP +  +  K EPG +
Sbjct: 865 EQTSISHENNQPTMNKCSDRKRPASQATSVKAEPGSI 901


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 16/61 (26%), Positives = 25/61 (40%)
 Frame = +2

Query: 77  ASKQTACTALVARGSASDVATHDQKTFARPVRVSQAKLDLALFLKNGSNSSTRKLV*RVL 256
           A K+  C     +  + D +  D+K   RPV V     DL   + +    ST + +   L
Sbjct: 37  ALKERQCQNWFDKFRSGDFSLKDEKRSGRPVEVDD---DLIKAIIDSDRHSTTREIAEKL 93

Query: 257 H 259
           H
Sbjct: 94  H 94


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -3

Query: 216 PFFRNKAKSNFAWLTLTG 163
           PFF+   K  + W+ L G
Sbjct: 230 PFFQTYKKQRYPWVQLAG 247


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -3

Query: 216 PFFRNKAKSNFAWLTLTG 163
           PFF+   K  + W+ L G
Sbjct: 145 PFFQTYKKQRYPWVQLAG 162


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -3

Query: 216 PFFRNKAKSNFAWLTLTG 163
           PFF+   K  + W+ L G
Sbjct: 464 PFFQTYKKQRYPWVQLAG 481


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -3

Query: 183 AWLTLTGR-AKVFWSCVATSEAEPRATSAVHAVCLLA 76
           A LT T R A++F S   T+   PR  S    VC+ A
Sbjct: 597 ALLTKTNRIARIFDSASRTA-VRPRYISPASQVCIAA 632


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = +1

Query: 355 MWLT*NSDQNWLLGW 399
           +W   + DQ W+L W
Sbjct: 595 LWYVPSLDQVWILNW 609


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -3

Query: 183 AWLTLTGR-AKVFWSCVATSEAEPRATSAVHAVCLLA 76
           A LT T R A++F S   T+   PR  S    VC+ A
Sbjct: 687 ALLTKTNRIARIFDSASRTA-VRPRYISPASQVCIAA 722


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,753
Number of Sequences: 438
Number of extensions: 4338
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)