Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0129.Seq
         (695 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g11420.1 68417.m01840 eukaryotic translation initiation facto...    29   3.9  
At3g25890.1 68416.m03226 AP2 domain-containing transcription fac...    28   6.8  
At5g52170.1 68418.m06476 homeobox-leucine zipper family protein ...    27   9.0  
At5g42760.1 68418.m05207 O-methyltransferase N-terminus domain-c...    27   9.0  
At4g12780.1 68417.m02005 auxilin-related low similarity to SP|Q2...    27   9.0  

>At4g11420.1 68417.m01840 eukaryotic translation initiation factor 3
           subunit 10 / eIF-3 theta / eIF3a (TIF3A1) identical to
           eukaryotic translation initiation factor 3 subunit 10
           (eIF-3 theta) (Eukaryotic translation initiation factor
           3 large subunit) (eIF3a) (p114). [Arabidopsis thaliana]
           SWISS-PROT:Q9LD55
          Length = 987

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 17/61 (27%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
 Frame = +2

Query: 515 ELLIQAKKENVLLQLEAAYRERLM--YAYSEVKRRLDYQLEKSNVERRLAQKHMVDWIVS 688
           + L +AK+E     +EAAY+ RL+    + E +++ + +L K   E  L +K+ +  ++ 
Sbjct: 689 DYLERAKREEAAPLIEAAYQRRLVEEREFYEREQQREVELSKERHESDLKEKNRLSRMLG 748

Query: 689 N 691
           N
Sbjct: 749 N 749


>At3g25890.1 68416.m03226 AP2 domain-containing transcription
           factor, putative 
          Length = 332

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +2

Query: 80  SKQTACTALVARGSASDVATHDQKTFARPVRVSQAK 187
           +K +AC+  V R  AS V      T ++PV V Q K
Sbjct: 103 TKISACSKKVLRSKASPVVGRSSTTVSKPVGVRQRK 138


>At5g52170.1 68418.m06476 homeobox-leucine zipper family protein /
           lipid-binding START domain-containing protein similar to
           Anthocyaninless2 (ANL2) (GP:5702094) [Arabidopsis
           thaliana];  contains Pfam PF00046: Homeobox domain and
           Pfam PF01852: START domain
          Length = 682

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 9/15 (60%), Positives = 14/15 (93%)
 Frame = -3

Query: 249 RHTSFRVEELEPFFR 205
           RHTS++++ELE FF+
Sbjct: 63  RHTSYQIQELESFFK 77


>At5g42760.1 68418.m05207 O-methyltransferase N-terminus
           domain-containing protein contains Pfam profile PF02409:
           O-methyltransferase N-terminus
          Length = 344

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -2

Query: 694 HVAHYPVDHVLLGETTLHVRLLELVVQT 611
           HV H P+ H+  GET  H+R L   +QT
Sbjct: 66  HVIHDPLAHLFAGET--HLRNLHTKIQT 91


>At4g12780.1 68417.m02005 auxilin-related low similarity to
           SP|Q27974 Auxilin {Bos taurus}
          Length = 485

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 20/50 (40%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
 Frame = +1

Query: 532 QEGERAPA-ARGRLQGEAHVRLLRGEAASGLPARE-VERGASSRPEAHGR 675
           Q  ERA   AR R   EAH ++ R        ARE  ER A  R  A  R
Sbjct: 132 QAVERATREARERAATEAHAKVQRAAVGKATDARERAERAAVQRAHAEAR 181


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,273,170
Number of Sequences: 28952
Number of extensions: 329429
Number of successful extensions: 992
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 962
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 992
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)