Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0128.Seq
         (732 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY819656-1|AAV70656.1|   56|Tribolium castaneum elongation facto...   106   2e-25
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        25   0.83 
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    25   0.83 
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   1.9  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    23   1.9  
EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxyla...    22   4.4  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   7.8  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      21   7.8  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   7.8  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   7.8  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   7.8  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   7.8  

>AY819656-1|AAV70656.1|   56|Tribolium castaneum elongation factor
           1-alpha protein.
          Length = 56

 Score =  106 bits (254), Expect = 2e-25
 Identities = 49/53 (92%), Positives = 51/53 (96%)
 Frame = +1

Query: 556 LQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALPRS 714
           LQDVYKIGGIGTVPVGRVETGVLKPG +VVFAPANITTEVKSVEMHHEALP +
Sbjct: 1   LQDVYKIGGIGTVPVGRVETGVLKPGMVVVFAPANITTEVKSVEMHHEALPEA 53


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 24.6 bits (51), Expect = 0.83
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +1

Query: 610 ETGVLKPGTIVVFAPANITTEVKS-VEMHHEALPRSCTW 723
           ETG ++PG I    P   T EV++ +E +    P   +W
Sbjct: 96  ETGSIRPGVIGGSKPRVATPEVENRIEQYKRENPSIFSW 134


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 24.6 bits (51), Expect = 0.83
 Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = -1

Query: 624 QHTSFN-SADGHGTNTTDFVYVLQ 556
           ++ SFN +A+GHG NT+   Y  Q
Sbjct: 280 EYNSFNWTANGHGHNTSSHNYYAQ 303


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 5/53 (9%)
 Frame = +1

Query: 580  GIGTVPVGRVETGVLKPGTIVVFAPANITTEV----KSVE-MHHEALPRSCTW 723
            G+G +P         KP   V  AP  +TT V     S E MH +   +  TW
Sbjct: 990  GLGLIPDNPSREDCTKPPEPVTPAPPQVTTGVDTGASSTEHMHPDWTTKPSTW 1042


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 669 SSDVGGGKDNNGTWFQHTSF 610
           ++ V GG +NNGT   H+ F
Sbjct: 182 AAQVSGGNNNNGTPGGHSGF 201


>EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxylase
           protein.
          Length = 475

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 15/59 (25%), Positives = 22/59 (37%)
 Frame = -2

Query: 671 SVVMLAGAKTTMVPGFNTPVSTLPTGTVPIPPILYTSCRGRRRGLSVGRAGGRMDRELQ 495
           ++V L GAK  M+         +    +    + YTS +        G  GG   R LQ
Sbjct: 152 TLVALLGAKARMIDRVKKEKPEMSDSEIVAKLVAYTSAQSHSSVERAGLLGGVKMRGLQ 210


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/28 (28%), Positives = 13/28 (46%)
 Frame = -2

Query: 410 CCLRAIQKWARKRQQLGCSQSS*CMRIL 327
           CC  A+      RQ +  S+   C+R +
Sbjct: 615 CCYHAVAPGTDIRQSIALSRKKKCIRYM 642


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/28 (28%), Positives = 13/28 (46%)
 Frame = -2

Query: 410 CCLRAIQKWARKRQQLGCSQSS*CMRIL 327
           CC  A+      RQ +  S+   C+R +
Sbjct: 507 CCYHAVAPGTDIRQSIALSRKKKCIRYM 534


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 10/43 (23%), Positives = 17/43 (39%)
 Frame = -3

Query: 604 CRRARYQYHRFCIRLAGEDAGACQWGVQVAGWIESFNEAFSVS 476
           C R   +  +F ++L   +  A  W +  A W+      F  S
Sbjct: 109 CNRDLGREKQFIVKLPSAERVAWMWCLIFAFWVPQLGSLFRSS 151


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 10/43 (23%), Positives = 17/43 (39%)
 Frame = -3

Query: 604 CRRARYQYHRFCIRLAGEDAGACQWGVQVAGWIESFNEAFSVS 476
           C R   +  +F ++L   +  A  W +  A W+      F  S
Sbjct: 109 CNRDLGREKQFIVKLPSAERVAWMWCLIFAFWVPQLGSLFRSS 151


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 10/43 (23%), Positives = 17/43 (39%)
 Frame = -3

Query: 604 CRRARYQYHRFCIRLAGEDAGACQWGVQVAGWIESFNEAFSVS 476
           C R   +  +F ++L   +  A  W +  A W+      F  S
Sbjct: 109 CNRDLGREKQFIVKLPSAERVAWMWCLIFAFWVPQLGSLFRSS 151


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 10/43 (23%), Positives = 17/43 (39%)
 Frame = -3

Query: 604 CRRARYQYHRFCIRLAGEDAGACQWGVQVAGWIESFNEAFSVS 476
           C R   +  +F ++L   +  A  W +  A W+      F  S
Sbjct: 109 CNRDLGREKQFIVKLPSAERVAWMWCLIFAFWVPQLGSLFRSS 151


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,547
Number of Sequences: 336
Number of extensions: 4393
Number of successful extensions: 13
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19571740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)