Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0128.Seq
(732 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 160 2e-40
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 160 2e-40
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 160 2e-40
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 94 2e-20
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 90 3e-19
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 71 2e-13
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 40 3e-04
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 34 0.018
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 34 0.024
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 33 0.042
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 31 0.17
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 30 0.30
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 29 0.52
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 28 1.6
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 28 1.6
SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|c... 27 2.8
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 27 2.8
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos... 27 2.8
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 27 3.6
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||... 27 3.6
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII... 26 6.4
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo... 26 6.4
SPBP23A10.06 |||manganese ion transporter |Schizosaccharomyces p... 25 8.4
SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificit... 25 8.4
SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces pomb... 25 8.4
SPAC323.08 |||ribonuclease MRP complex subunit |Schizosaccharomy... 25 8.4
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 160 bits (389), Expect = 2e-40
Identities = 75/84 (89%), Positives = 79/84 (94%)
Frame = +3
Query: 3 AERELGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFE 182
AERE GITIDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCAVLI+ GTGEFE
Sbjct: 65 AERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAVLIIGGGTGEFE 124
Query: 183 AGISKNGQTREHALLAFTLGVKQL 254
AGISK+GQTREHALLA+TLGVKQL
Sbjct: 125 AGISKDGQTREHALLAYTLGVKQL 148
Score = 128 bits (309), Expect = 8e-31
Identities = 59/66 (89%), Positives = 62/66 (93%)
Frame = +1
Query: 508 SILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTEVKSVE 687
SI PPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGV+KPG IV FAPA +TTEVKSVE
Sbjct: 232 SIEPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMIVTFAPAGVTTEVKSVE 291
Query: 688 MHHEAL 705
MHHE+L
Sbjct: 292 MHHESL 297
Score = 116 bits (278), Expect = 5e-27
Identities = 54/107 (50%), Positives = 71/107 (66%)
Frame = +2
Query: 254 LVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKM 433
+V VNKMD+T +S+ RFEEI KE S++IKK+G+NP V FVP+SG+ GDNM+EP+T M
Sbjct: 149 IVAVNKMDTTG--WSQARFEEIVKETSNFIKKVGFNPKTVPFVPVSGFQGDNMIEPTTNM 206
Query: 434 PWFKGWQVERKEGKADGKCLIEALDPSCHLHAPLTSPCVFPCKTYTK 574
PW++GWQ E K G GK L+EA+D P P P + K
Sbjct: 207 PWYQGWQKETKAGVVKGKTLLEAIDSIEPPARPTDKPLRLPLQDVYK 253
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 160 bits (388), Expect = 2e-40
Identities = 74/84 (88%), Positives = 79/84 (94%)
Frame = +3
Query: 3 AERELGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFE 182
AERE GITIDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCA+LI+ GTGEFE
Sbjct: 65 AERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGTGEFE 124
Query: 183 AGISKNGQTREHALLAFTLGVKQL 254
AGISK+GQTREHALLA+TLGVKQL
Sbjct: 125 AGISKDGQTREHALLAYTLGVKQL 148
Score = 128 bits (309), Expect = 8e-31
Identities = 59/66 (89%), Positives = 62/66 (93%)
Frame = +1
Query: 508 SILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTEVKSVE 687
SI PPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGV+KPG IV FAPA +TTEVKSVE
Sbjct: 232 SIEPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMIVTFAPAGVTTEVKSVE 291
Query: 688 MHHEAL 705
MHHE+L
Sbjct: 292 MHHESL 297
Score = 116 bits (278), Expect = 5e-27
Identities = 54/107 (50%), Positives = 71/107 (66%)
Frame = +2
Query: 254 LVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKM 433
+V VNKMD+T +S+ RFEEI KE S++IKK+G+NP V FVP+SG+ GDNM+EP+T M
Sbjct: 149 IVAVNKMDTTG--WSQARFEEIVKETSNFIKKVGFNPKTVPFVPVSGFQGDNMIEPTTNM 206
Query: 434 PWFKGWQVERKEGKADGKCLIEALDPSCHLHAPLTSPCVFPCKTYTK 574
PW++GWQ E K G GK L+EA+D P P P + K
Sbjct: 207 PWYQGWQKETKAGVVKGKTLLEAIDSIEPPARPTDKPLRLPLQDVYK 253
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 160 bits (388), Expect = 2e-40
Identities = 74/84 (88%), Positives = 79/84 (94%)
Frame = +3
Query: 3 AERELGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFE 182
AERE GITIDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCA+LI+ GTGEFE
Sbjct: 65 AERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGTGEFE 124
Query: 183 AGISKNGQTREHALLAFTLGVKQL 254
AGISK+GQTREHALLA+TLGVKQL
Sbjct: 125 AGISKDGQTREHALLAYTLGVKQL 148
Score = 128 bits (309), Expect = 8e-31
Identities = 59/66 (89%), Positives = 62/66 (93%)
Frame = +1
Query: 508 SILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTEVKSVE 687
SI PPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGV+KPG IV FAPA +TTEVKSVE
Sbjct: 232 SIEPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMIVTFAPAGVTTEVKSVE 291
Query: 688 MHHEAL 705
MHHE+L
Sbjct: 292 MHHESL 297
Score = 116 bits (278), Expect = 5e-27
Identities = 54/107 (50%), Positives = 71/107 (66%)
Frame = +2
Query: 254 LVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKM 433
+V VNKMD+T +S+ RFEEI KE S++IKK+G+NP V FVP+SG+ GDNM+EP+T M
Sbjct: 149 IVAVNKMDTTG--WSQARFEEIVKETSNFIKKVGFNPKTVPFVPVSGFQGDNMIEPTTNM 206
Query: 434 PWFKGWQVERKEGKADGKCLIEALDPSCHLHAPLTSPCVFPCKTYTK 574
PW++GWQ E K G GK L+EA+D P P P + K
Sbjct: 207 PWYQGWQKETKAGVVKGKTLLEAIDSIEPPARPTDKPLRLPLQDVYK 253
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 93.9 bits (223), Expect = 2e-20
Identities = 42/83 (50%), Positives = 57/83 (68%)
Frame = +3
Query: 6 ERELGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEA 185
ERE G T+++ FET +++DAPGH+ ++ NMI G SQAD VL+++A GEFEA
Sbjct: 297 EREKGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEA 356
Query: 186 GISKNGQTREHALLAFTLGVKQL 254
G + GQTREHA+LA T G+ L
Sbjct: 357 GFERGGQTREHAVLARTQGINHL 379
Score = 35.1 bits (77), Expect = 0.010
Identities = 17/53 (32%), Positives = 29/53 (54%)
Frame = +1
Query: 526 RPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTEVKSV 684
R + P +P+ YK +GT+ G++E G +K + V+ P N T EV ++
Sbjct: 463 RKVNAPFIMPIASKYK--DLGTILEGKIEAGSIKKNSNVLVMPINQTLEVTAI 513
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 89.8 bits (213), Expect = 3e-19
Identities = 43/83 (51%), Positives = 53/83 (63%)
Frame = +3
Query: 6 ERELGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEA 185
ER G+T+D+A FE+ K I DAPGHRDFI MI G S AD AVL+V + FE
Sbjct: 236 ERARGVTMDVASTTFESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFER 295
Query: 186 GISKNGQTREHALLAFTLGVKQL 254
G +NGQTREHA L LG+ ++
Sbjct: 296 GFLENGQTREHAYLLRALGISEI 318
Score = 50.0 bits (114), Expect = 3e-07
Identities = 29/68 (42%), Positives = 41/68 (60%), Gaps = 3/68 (4%)
Frame = +2
Query: 254 LVGVNKMDSTEPPYSEPRFEEIKKEVSSY-IKKIGYNPAAVAFVPISGWHGDNML--EPS 424
+V VNK+D +SE RF+EIK VS + IK +G+ + V FVPIS G N++ + S
Sbjct: 319 VVSVNKLDLMS--WSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSS 376
Query: 425 TKMPWFKG 448
W+KG
Sbjct: 377 DLYKWYKG 384
Score = 37.9 bits (84), Expect = 0.001
Identities = 24/71 (33%), Positives = 37/71 (52%)
Frame = +1
Query: 511 ILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTEVKSVEM 690
++PP +P KPLRL + DVY+ TV GRVE G ++ ++ + VK+V
Sbjct: 394 LVPPEKPYRKPLRLSIDDVYRSPRSVTV-TGRVEAGNVQVNQVLYDVSSQEDAYVKNVIR 452
Query: 691 HHEALPRSCTW 723
+ + S TW
Sbjct: 453 NSDP---SSTW 460
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 70.5 bits (165), Expect = 2e-13
Identities = 37/83 (44%), Positives = 52/83 (62%)
Frame = +3
Query: 6 ERELGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEA 185
E+ GITI A ++ET+ + +D PGH D+IKNMITG + D A+++V+A G+
Sbjct: 97 EKARGITISSAHVEYETANRHYAHVDCPGHADYIKNMITGAATMDGAIIVVSATDGQMP- 155
Query: 186 GISKNGQTREHALLAFTLGVKQL 254
QTREH LLA +GVKQ+
Sbjct: 156 ------QTREHLLLARQVGVKQI 172
Score = 49.6 bits (113), Expect = 5e-07
Identities = 27/73 (36%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Frame = +1
Query: 520 PARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGT--IVVFAPANITTEVKSVEMH 693
P R TD P + ++DV+ I G GTV GRVE G LK G +V +++ T V +EM
Sbjct: 245 PERKTDVPFLMAIEDVFSISGRGTVVTGRVERGTLKKGAEIEIVGYGSHLKTTVTGIEMF 304
Query: 694 HEALPRSCTWRQC 732
+ L + C
Sbjct: 305 KKQLDAAVAGDNC 317
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 40.3 bits (90), Expect = 3e-04
Identities = 21/57 (36%), Positives = 28/57 (49%)
Frame = +3
Query: 3 AERELGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 173
AER+ GITI+ A F + +ID PGH DF + + D AV I+ G
Sbjct: 73 AERQRGITINSAAISFTWRNQRINLIDTPGHADFTFEVERSVAVLDGAVAIIDGSAG 129
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 34.3 bits (75), Expect = 0.018
Identities = 21/57 (36%), Positives = 29/57 (50%)
Frame = +3
Query: 48 FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREH 218
FE S Y + IID PGH DF + D AVL++ A +G I+ + Q R +
Sbjct: 141 FEKS-YNINIIDTPGHIDFTIEVERALRVLDGAVLVLCAVSGVQSQTITVDRQMRRY 196
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 33.9 bits (74), Expect = 0.024
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = +3
Query: 18 GITIDIALWK--FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 173
GIT I + F+ ++T +D PGH F G + AD VL+VA G
Sbjct: 203 GITQKIGAFTVPFDKGSKFITFLDTPGHMAFEAMRKRGANIADIVVLVVAGDDG 256
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 33.1 bits (72), Expect = 0.042
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Frame = +3
Query: 6 ERELGITIDIA----LWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 173
ER GIT+ ++ + Y + +ID PGH DF ++ + + +L+V A G
Sbjct: 101 ERRRGITVKAQTCSMIYYYHGQSYLLNLIDTPGHVDFRAEVMHSLAACEGCILLVDASQG 160
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 31.1 bits (67), Expect = 0.17
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +3
Query: 66 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 161
+V+ +D PGH + M+ G + D A+L++A
Sbjct: 109 HVSFVDCPGHDILMATMLNGAAVMDAALLLIA 140
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 30.3 bits (65), Expect = 0.30
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +3
Query: 63 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 173
Y + +ID+PGH DF + + + D A ++V A G
Sbjct: 94 YLINLIDSPGHVDFSSEVSSASRLCDGAFVLVDAVEG 130
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 29.5 bits (63), Expect = 0.52
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 75 IIDAPGHRDFIKNMITGTSQADCAVLIV 158
IID PGH F GTS + A+L++
Sbjct: 553 IIDTPGHESFTNLRSRGTSLCNIAILVI 580
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 27.9 bits (59), Expect = 1.6
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +3
Query: 63 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 158
+ V +ID+PGH DF + D A+++V
Sbjct: 98 FLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 27.9 bits (59), Expect = 1.6
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +3
Query: 63 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 158
+ V +ID+PGH DF + D A+++V
Sbjct: 98 FLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 367
Score = 27.1 bits (57), Expect = 2.8
Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Frame = +3
Query: 294 TVSPDLRKSRRKYPHTSRRLATTQLL---SLSCPFLDGTETTCWSLQPKCLGSRDGRWSV 464
+ +PD+ ++PHT +R +T + L LSC + +E + P G +D + +
Sbjct: 145 STNPDVLYMSSQHPHTQQRYSTLKRLMVRCLSCEYSTLSEASDSMSNPLFFGDQDNGYVI 204
Query: 465 RKA 473
++
Sbjct: 205 SQS 207
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 27.1 bits (57), Expect = 2.8
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -2
Query: 674 TSVVMLAGAKTTMVPGFNTPVSTLPTGTVPIPPILYTSC 558
+SVV+ + +T V + + VST TGTV +P +C
Sbjct: 86 SSVVLYSAKETVTVSSYWSLVSTSVTGTVYVPYTSSVAC 124
>SPBC11B10.05c |rsp1||random septum position protein
Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 494
Score = 27.1 bits (57), Expect = 2.8
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Frame = +2
Query: 323 KEVS---SYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCL 493
KEVS SYI +P +G+ +N+++P + P FKG K + K
Sbjct: 159 KEVSTSKSYISSGYLHPKTSPIFKKNGYATENVVDPISSSPRFKG----PNYNKFNAKLY 214
Query: 494 IEALDPSCHLHAPLT 538
+E+L + PL+
Sbjct: 215 LESLREKRRTYTPLS 229
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 26.6 bits (56), Expect = 3.6
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 78 IDAPGHRDFIKNMITGTSQADCAVLIV 158
ID PGH DF+ + + +D VL+V
Sbjct: 214 IDTPGHVDFVDEVAAPMAISDGVVLVV 240
>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 380
Score = 26.6 bits (56), Expect = 3.6
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = +3
Query: 12 ELGITIDIALWKFETSKYYV--TIIDAPGHRDFIKN 113
E + I+I + E +++ T+ID PG DFI N
Sbjct: 68 EKTVEIEITKAELEEKNFHLRLTVIDTPGFGDFINN 103
>SPAC144.09c |sfc2||RNA polymerase III transcription factor
TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
Length = 374
Score = 25.8 bits (54), Expect = 6.4
Identities = 7/19 (36%), Positives = 12/19 (63%)
Frame = +1
Query: 676 KSVEMHHEALPRSCTWRQC 732
+ +E+H + P +CTW C
Sbjct: 102 RHIEVHRKPKPYACTWEGC 120
>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1513
Score = 25.8 bits (54), Expect = 6.4
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +1
Query: 7 SVSWVSQSILLSGSSKLASTMLPSLMLLDTEISSRT*SQEP 129
+V+W+ +L S S L S +PS + + I S S+ P
Sbjct: 559 TVNWIKDGLLNSSISVLKSMRIPSSVSYEAVIISMVLSKNP 599
>SPBP23A10.06 |||manganese ion transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 335
Score = 25.4 bits (53), Expect = 8.4
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +1
Query: 499 SSRSILPPARPTDKPLRLPLQDVYKI 576
SS IL RP KPL P+ +Y+I
Sbjct: 67 SSAKILGKGRPAPKPLGGPVSGLYQI 92
>SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificity
factor complex subunit Rna14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 733
Score = 25.4 bits (53), Expect = 8.4
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -2
Query: 623 NTPVSTLPTGTVPIPPIL 570
N P S LPT VP+P I+
Sbjct: 666 NPPTSALPTVPVPLPSII 683
>SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 347
Score = 25.4 bits (53), Expect = 8.4
Identities = 18/57 (31%), Positives = 28/57 (49%)
Frame = +2
Query: 272 MDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWF 442
+D +P + F IKK+V Y+ ++ + P + G N LEP TK PW+
Sbjct: 107 LDLKKPLLPQILFGNIKKDV--YLDQV-HRPRHYRGSGSAPLFG-NFLEPLTKTPWY 159
>SPAC323.08 |||ribonuclease MRP complex subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 211
Score = 25.4 bits (53), Expect = 8.4
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = -2
Query: 299 HCMVVQWNPFCLLLRELFDTEGESEQGMLTGLTVLRDTSFEFTGTGSYDEHSAISL 132
H + V W +LLR L + +E+ + L L + F FT ++ ++ A+ L
Sbjct: 22 HRLSVWWRHVRMLLRRLKQSLDGNEKAKIAILEQLPKSYFYFTNLIAHGQYPALGL 77
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,301,873
Number of Sequences: 5004
Number of extensions: 73314
Number of successful extensions: 260
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 258
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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