Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0128.Seq
         (732 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)                126   2e-29
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)             101   8e-22
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)           97   1e-20
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)                     37   0.015
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.32 
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)               32   0.42 
SB_19307| Best HMM Match : GTP_EFTU_D2 (HMM E-Value=0.068)             30   1.7  
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)              30   2.2  
SB_621| Best HMM Match : SNF2_N (HMM E-Value=0)                        29   2.9  
SB_13701| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.8  
SB_52588| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.8  
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)                    28   6.8  
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)              28   6.8  
SB_25301| Best HMM Match : GTP_EFTU_D2 (HMM E-Value=0.066)             28   6.8  
SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.8  
SB_43213| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.0  
SB_59169| Best HMM Match : Sre (HMM E-Value=3.3)                       28   9.0  

>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
          Length = 322

 Score =  126 bits (303), Expect = 2e-29
 Identities = 57/66 (86%), Positives = 63/66 (95%)
 Frame = +1

Query: 508 SILPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTEVKSVE 687
           SILPP+RP+  PLRLPLQDVYKIGGIGTVPVGRVETGVLKPGT+V F+P+NITTEVKSVE
Sbjct: 93  SILPPSRPSGLPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTVVTFSPSNITTEVKSVE 152

Query: 688 MHHEAL 705
           MHHE+L
Sbjct: 153 MHHESL 158



 Score = 91.1 bits (216), Expect = 9e-19
 Identities = 41/44 (93%), Positives = 42/44 (95%)
 Frame = +3

Query: 3   AERELGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ 134
           AERE GITIDIALWKFET KYYVT+IDAPGHRDFIKNMITGTSQ
Sbjct: 17  AERERGITIDIALWKFETLKYYVTVIDAPGHRDFIKNMITGTSQ 60



 Score = 37.9 bits (84), Expect = 0.008
 Identities = 22/62 (35%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
 Frame = +2

Query: 407 NMLEPSTKMPWFKGWQVER------KEGKADGKCLIEALDPSCHLHAPLTSPCVFPCKTY 568
           NM+  +++MPWFK W +ER      KE  A G  L E LD       P   P   P +  
Sbjct: 53  NMITGTSQMPWFKQWTIERVDPATKKEANASGVTLFEGLDSILPPSRPSGLPLRLPLQDV 112

Query: 569 TK 574
            K
Sbjct: 113 YK 114


>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
          Length = 123

 Score =  101 bits (241), Expect = 8e-22
 Identities = 45/76 (59%), Positives = 58/76 (76%)
 Frame = +3

Query: 27  IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 206
           +D+ L +F+T    +T++DAPGH+DFI NMITG +QAD A+L+V A TGEFEAG    GQ
Sbjct: 1   MDVGLTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITGEFEAGFESGGQ 60

Query: 207 TREHALLAFTLGVKQL 254
           TREHA+L  +LGV QL
Sbjct: 61  TREHAILVRSLGVTQL 76


>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
          Length = 547

 Score = 97.5 bits (232), Expect = 1e-20
 Identities = 42/83 (50%), Positives = 59/83 (71%)
 Frame = +3

Query: 6   ERELGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEA 185
           ER+ G T+++    F+T   + T++DAPGH+ F+ NMI+G +QAD  VL+++A  GEFE 
Sbjct: 203 ERDKGNTVEVGRAAFDTDTKHFTLLDAPGHKSFVPNMISGATQADLGVLVISARKGEFET 262

Query: 186 GISKNGQTREHALLAFTLGVKQL 254
           G  + GQTREHA+LA T GVK L
Sbjct: 263 GFERGGQTREHAMLAKTAGVKHL 285



 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 16/34 (47%), Positives = 26/34 (76%)
 Frame = +2

Query: 263 VNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNP 364
           VNKMD     ++E R+EEIK +++ ++KK+G+NP
Sbjct: 289 VNKMDDPTVKWNEERYEEIKVKLTPFLKKVGFNP 322


>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 359

 Score = 37.1 bits (82), Expect = 0.015
 Identities = 14/56 (25%), Positives = 29/56 (51%)
 Frame = +3

Query: 6   ERELGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 173
           ER+ GI++  ++  F      + I+D PGH+DF ++     +  D  ++++    G
Sbjct: 60  ERQRGISVATSVLAFNYRDKKINILDTPGHKDFAEDTFRTLTAVDSVIVVIDVAKG 115


>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 545

 Score = 32.7 bits (71), Expect = 0.32
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +3

Query: 69  VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 173
           +T ID PGH  F      G +  D  VL+VAA  G
Sbjct: 78  ITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDG 112


>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
          Length = 240

 Score = 32.3 bits (70), Expect = 0.42
 Identities = 14/49 (28%), Positives = 21/49 (42%)
 Frame = +3

Query: 18  GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 164
           GIT  I  +  +     +  +D PGH  F      G    D  +++VAA
Sbjct: 123 GITQHIGAYSVKVGDQKIAFLDTPGHEAFTAMRARGAQVTDLVIIVVAA 171


>SB_19307| Best HMM Match : GTP_EFTU_D2 (HMM E-Value=0.068)
          Length = 173

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 16/65 (24%), Positives = 30/65 (46%)
 Frame = +1

Query: 520 PARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTEVKSVEMHHE 699
           P R T   L   +   + I G GT+  G + +G +     V      +T +VKS++M  +
Sbjct: 104 PERTTSGSLLFAVDHCFSIRGQGTIMTGTILSGSVCVNDTVEIPSLKVTKKVKSMQMFKK 163

Query: 700 ALPRS 714
            + ++
Sbjct: 164 PVDKA 168


>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
          Length = 783

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 75  IIDAPGHRDFIKNMITGTSQADCAVLIV 158
           IID PGH  F      G+S  D A+L+V
Sbjct: 682 IIDTPGHESFSNLRSRGSSLCDMAILVV 709


>SB_621| Best HMM Match : SNF2_N (HMM E-Value=0)
          Length = 1432

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = -1

Query: 621 HTSFNSADGHGTNTTDFVYVLQGKTQGLVSGACRWQDGSRASMRHFPSAL 472
           HT+  + D  G       Y+   K QGL  G   W+DG+  S R+F S +
Sbjct: 36  HTTVKNLDEFGNTVNQIDYLC--KWQGLPYGESTWEDGNLIS-RYFQSEI 82


>SB_13701| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 476

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +2

Query: 395 WHGDNMLEPSTKMPWFKGWQVERKE 469
           +H DN    +   PWF+ W  +++E
Sbjct: 191 YHNDNKTHSTQTGPWFRAWSNQKRE 215


>SB_52588| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 94

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -1

Query: 573 FVYVLQGKTQGLVSGACRWQDGSRASMRHF 484
           F YV    + GL+SG  R++ GSR  + HF
Sbjct: 21  FPYVHYRNSVGLISGTPRYRFGSRDQLGHF 50


>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 833

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +3

Query: 63  YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 173
           + + +ID+PGH DF   +       D A+++V   +G
Sbjct: 99  FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG 135


>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
          Length = 541

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +3

Query: 78  IDAPGHRDFIKNMITGTSQADCAVLIVA 161
           +D PGH   +  M+ G +  D A+L++A
Sbjct: 69  VDCPGHDILMATMLNGAAVMDAALLLIA 96


>SB_25301| Best HMM Match : GTP_EFTU_D2 (HMM E-Value=0.066)
          Length = 177

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 10/40 (25%), Positives = 20/40 (50%)
 Frame = +1

Query: 535 DKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAP 654
           ++P    + D Y + G+GTV  G    G+++    ++  P
Sbjct: 102 EEPSEFQIDDTYSVPGVGTVISGTCMKGIIRLNDTLLLGP 141


>SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3112

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
 Frame = +2

Query: 278  STEPPYSEPRFEEIKKE----VSSYIKKIGYNPA-AVAFVPISGWHGDNMLE 418
            ST    S+  FE  KK      +S+ K    +P+  + FVP   WHG+ M+E
Sbjct: 1062 STRANSSQGGFEAKKKSWTKLSASFAKPEVVDPSDKIRFVPAVNWHGEQMIE 1113


>SB_43213| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 919

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -3

Query: 451 PSLEPRHFG*RLQHVVSVPSRNGHESDSSWVVANLLD 341
           P+LEP + G  L  + S  S  GH+ D+   ++ LL+
Sbjct: 378 PNLEPSYIGKMLATIESTLSAKGHQEDAEEFLSCLLN 414


>SB_59169| Best HMM Match : Sre (HMM E-Value=3.3)
          Length = 447

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = -2

Query: 686 STDLTSVVMLAGAKTTMVPGFNTPVSTLPTGTVPIPPILYTS 561
           +TD+TS+ M+    TT +      ++T  T  + I  I+ T+
Sbjct: 234 TTDITSITMIITTSTTDITSITMIITTTTTDDISITMIIITT 275


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,510,430
Number of Sequences: 59808
Number of extensions: 579718
Number of successful extensions: 2017
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2016
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1962001171
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)