Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0121.Seq
         (743 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    25   0.84 
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    23   2.0  
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    23   3.4  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    23   3.4  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    23   3.4  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    22   6.0  
EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine hydroxy...    21   7.9  
AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    21   7.9  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    21   7.9  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +1

Query: 529  IELHASRWQLPGCAVLYY 582
            I LH S W   GC +LY+
Sbjct: 1507 ITLHLSAWSDGGCPMLYF 1524


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +1

Query: 502 FHRRTLLQLIELHASRWQLP 561
           FH    +  I+L +S WQ+P
Sbjct: 385 FHEIRYMSTIDLRSSYWQIP 404


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
          protein.
          Length = 496

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = +2

Query: 32 WGTWSRAQW 58
          WGTWS  +W
Sbjct: 30 WGTWSTYRW 38



 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 126 TFLESLLNTCQQWYHD 173
           TF++S LN  Q+W  D
Sbjct: 124 TFIKSALNLVQKWGFD 139


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 11/45 (24%), Positives = 20/45 (44%)
 Frame = -2

Query: 277 DGPAPQLAYISSKNDRNAINRGRPPPIIAPNSLSLSWYHCWHVLS 143
           +G  P++ Y     +   +  G    +  PN+ +  W HC  VL+
Sbjct: 114 EGEPPRICYYHFTLELYTV-LGAACQVCTPNATNTVWSHCQCVLA 157


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 11/45 (24%), Positives = 20/45 (44%)
 Frame = -2

Query: 277 DGPAPQLAYISSKNDRNAINRGRPPPIIAPNSLSLSWYHCWHVLS 143
           +G  P++ Y     +   +  G    +  PN+ +  W HC  VL+
Sbjct: 114 EGEPPRICYYHFTLELYTV-LGAACQVCTPNATNTVWSHCQCVLA 157


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -3

Query: 93  SGGRPAGVPRRLHCARDQVPHSVHQGTGAHG 1
           S G PAG    L CA + +  ++  G+  +G
Sbjct: 42  SNGLPAGAGSNLLCASNGLVTTLASGSSLNG 72


>EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine
           hydroxylase protein.
          Length = 532

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 14/47 (29%), Positives = 20/47 (42%)
 Frame = +2

Query: 371 ASDTENLFFVLTYIGRDLETQLPGDLERLLTAVRDAFLNTAAAPSIG 511
           ASD +N   ++T    DL+   PG  ++   A R      A A   G
Sbjct: 200 ASDLDNCNHLMTKYEPDLDMNHPGFADKEYRARRKEIAEIAFAYKYG 246


>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 19/54 (35%), Positives = 24/54 (44%)
 Frame = -2

Query: 328 DEREQHVPGLGAGSPSLDGPAPQLAYISSKNDRNAINRGRPPPIIAPNSLSLSW 167
           DER+   P    GS + DG A   A  +S  D      G   P + P S SLS+
Sbjct: 34  DERDGGKPPELTGSTNGDGGARSNADSTSHTD------GASTPDVRPPSSSLSY 81


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 19/54 (35%), Positives = 24/54 (44%)
 Frame = -2

Query: 328 DEREQHVPGLGAGSPSLDGPAPQLAYISSKNDRNAINRGRPPPIIAPNSLSLSW 167
           DER+   P    GS + DG A   A  +S  D      G   P + P S SLS+
Sbjct: 190 DERDGGKPPELTGSTNGDGGARSNADSTSHTD------GASTPDVRPPSSSLSY 237


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,855
Number of Sequences: 336
Number of extensions: 3946
Number of successful extensions: 19
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 19819879
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)