Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0121.Seq
         (743 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC9B6.09c |mdl1||mitochondrial peptide-transporting ATPase|Sch...    26   4.9  
SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal pro...    25   8.6  
SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein S4|Schizosacch...    25   8.6  
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual      25   8.6  
SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos...    25   8.6  

>SPBC9B6.09c |mdl1||mitochondrial peptide-transporting
           ATPase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 726

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = -3

Query: 456 NRSKSPGS*VSKSRPMYVSTKNRFSVSLAEGTGCLMQSSQHL 331
           +R  +  S V KS  MY+S   R SVS   G G ++  S  L
Sbjct: 263 SRLTTDSSIVGKSLSMYLSDGLRSSVSAIAGIGMMLYVSMRL 304


>SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal
           protein S4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 262

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = -1

Query: 224 HQPRSSTADHRAQQLVPIVVPLLARVKQRL 135
           + P+ S   H+A++ +P++V L  R+K  L
Sbjct: 27  YAPKPSPGPHKARECLPLIVFLRNRLKYAL 56


>SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein
           S4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 262

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = -1

Query: 224 HQPRSSTADHRAQQLVPIVVPLLARVKQRL 135
           + P+ S   H+A++ +P++V L  R+K  L
Sbjct: 27  YAPKPSPGPHKARECLPLIVFLRNRLKYAL 56


>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1202

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -3

Query: 405 VSTKNRFSVSLAEGTGCLMQSSQ 337
           +ST N+ +VSLA G   L+ S+Q
Sbjct: 45  ISTPNKLAVSLAGGLKALLSSNQ 67


>SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein
           S4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 262

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = -1

Query: 224 HQPRSSTADHRAQQLVPIVVPLLARVKQRL 135
           + P+ S   H+A++ +P++V L  R+K  L
Sbjct: 27  YAPKPSPGPHKARECLPLIVFLRNRLKYAL 56


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,010,142
Number of Sequences: 5004
Number of extensions: 60356
Number of successful extensions: 174
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)