Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0121.Seq
(743 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_03_0035 + 13977150-13979228,13979351-13979824 33 0.24
12_02_0862 - 23769682-23770119,23770218-23770322 31 1.3
02_05_0477 - 29339649-29340253,29340880-29341492 31 1.3
04_04_0786 - 28052981-28053040,28053123-28053222,28053447-280535... 30 2.2
04_03_0894 - 20619037-20620392 29 2.9
01_06_1186 + 35223272-35224723,35225536-35225610,35226245-352265... 29 2.9
03_05_0379 + 23628200-23628366,23629074-23629133,23630177-236302... 29 3.9
02_05_0218 + 26860319-26862448 29 3.9
01_07_0119 + 41179458-41179533,41180455-41180921 29 3.9
01_06_0473 - 29598704-29599642 29 3.9
08_01_1042 + 10560340-10560627,10561001-10561415,10561571-10561614 29 5.2
03_02_0687 + 10413338-10413430,10413538-10413934,10414040-104141... 29 5.2
01_06_0210 - 27559090-27559239,27560445-27560567,27561069-275611... 29 5.2
11_06_0612 + 25507208-25507269,25507690-25508275 28 6.8
01_06_1714 - 39368509-39369153,39369607-39369850,39369995-393701... 28 6.8
07_03_1607 + 28119886-28120239,28121097-28121153,28121377-281214... 28 9.0
03_02_0257 + 6907997-6908504,6909316-6909348,6910163-6910308 28 9.0
01_06_1207 + 35414292-35414918 28 9.0
>03_03_0035 + 13977150-13979228,13979351-13979824
Length = 850
Score = 33.1 bits (72), Expect = 0.24
Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Frame = -2
Query: 376 TSRRHRLPDAVLAALADEREQHVPGLG---AGSPSLDGPAPQLAYISSKNDRNAINRGRP 206
T H +P ++ D E H G+G GS SL P P+ +S +NDR GR
Sbjct: 20 TKGGHDVPPSIKV---DIGEYHGGGIGNGDGGSASLFEPRPEETPVSRRNDRGGGGGGRE 76
Query: 205 PP 200
PP
Sbjct: 77 PP 78
>12_02_0862 - 23769682-23770119,23770218-23770322
Length = 180
Score = 30.7 bits (66), Expect = 1.3
Identities = 20/64 (31%), Positives = 29/64 (45%)
Frame = -3
Query: 249 SPARTTGTPSTEVVHRRSSRPTACPYRGTIVGTC*AATRGRFPSARARPRRCSGGRPAGV 70
SPA PS+ +H+ ++ T P GT G T FP PR+ + G+ A
Sbjct: 5 SPATVAARPSSRRLHKVAAMATQKPTSGTRRG-----TTVYFPVGEPGPRQTTSGKAAAP 59
Query: 69 PRRL 58
P +L
Sbjct: 60 PVKL 63
>02_05_0477 - 29339649-29340253,29340880-29341492
Length = 405
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = -2
Query: 382 SITSRRHRLPDAVLAALADEREQHVPGLGAGSPSLDGPAPQL 257
++ S R + DAV A +A + V G G G + + PAP +
Sbjct: 34 AVASLRREIRDAVAALVASNEDGVVEGEGEGEDAAEAPAPSV 75
>04_04_0786 -
28052981-28053040,28053123-28053222,28053447-28053574,
28053654-28053821,28053901-28054013,28054135-28054287,
28054385-28054528,28054794-28055529
Length = 533
Score = 29.9 bits (64), Expect = 2.2
Identities = 16/37 (43%), Positives = 19/37 (51%)
Frame = +2
Query: 35 GTWSRAQWSRRGTPAGRPPLHRRGRARADGNLPRVAA 145
GTW R + R G P RPP G + A G L R A+
Sbjct: 37 GTWRRPSFPRHGAPPHRPP---TGSSSAAGALSRRAS 70
>04_03_0894 - 20619037-20620392
Length = 451
Score = 29.5 bits (63), Expect = 2.9
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -3
Query: 93 SGGRPAGVPRRLHCARDQVPHS 28
SGG P G R++ C+ D+ PH+
Sbjct: 351 SGGAPGGAQRQVACSADRCPHT 372
>01_06_1186 +
35223272-35224723,35225536-35225610,35226245-35226585,
35226621-35227005,35227131-35227559
Length = 893
Score = 29.5 bits (63), Expect = 2.9
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Frame = -2
Query: 355 PDAVLAALADERE---QHVPGLGAGSPSLDGPAPQLAYISSKNDR 230
PD+V + DE E H G GA + + P P LA S++DR
Sbjct: 511 PDSVPSTGRDEEEGSSHHGNGSGAARENPENPLPDLALAKSESDR 555
>03_05_0379 +
23628200-23628366,23629074-23629133,23630177-23630209,
23630253-23630665,23631522-23632008,23632623-23633334
Length = 623
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +3
Query: 540 RIPVAATRMRSSLLLSFVQIARCARW 617
R P AA R+R +LL S+V+ ARW
Sbjct: 264 RYPGAARRLRGALLASYVEDNAAARW 289
>02_05_0218 + 26860319-26862448
Length = 709
Score = 29.1 bits (62), Expect = 3.9
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = -2
Query: 370 RRHRLPDAVLAALADEREQHV-PGLGAGSPSLDGPAP 263
R H +PD + A ++ V PGL A SP L GPAP
Sbjct: 288 RHHAIPDDLYLARNQQQSSAVAPGL-AYSPPLHGPAP 323
>01_07_0119 + 41179458-41179533,41180455-41180921
Length = 180
Score = 29.1 bits (62), Expect = 3.9
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = -3
Query: 120 SARARPRRCSGGRPAGVPRRLH 55
SARA+PRRC G G + LH
Sbjct: 15 SARAQPRRCPAGSSGGPSQSLH 36
>01_06_0473 - 29598704-29599642
Length = 312
Score = 29.1 bits (62), Expect = 3.9
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +3
Query: 471 ETLSSILPRLLPSAYFTAAHRASRIPVAATRMRSS 575
ET+ +LP L+PSA A SR PV A + +S
Sbjct: 38 ETVEDLLPLLVPSAMRRARAPISRFPVGAVGLGAS 72
>08_01_1042 + 10560340-10560627,10561001-10561415,10561571-10561614
Length = 248
Score = 28.7 bits (61), Expect = 5.2
Identities = 15/29 (51%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
Frame = -3
Query: 123 PSARARPRRCSGGRP---AGVPRRLHCAR 46
P R+RPRRC GRP AG P AR
Sbjct: 155 PGRRSRPRRCLAGRPQATAGSPAARLAAR 183
>03_02_0687 +
10413338-10413430,10413538-10413934,10414040-10414168,
10414370-10414517,10414647-10415925
Length = 681
Score = 28.7 bits (61), Expect = 5.2
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -2
Query: 292 GSPSLDGPAPQLAYISSKNDRN 227
G+P GPAP L Y+ + ND N
Sbjct: 424 GNPGRAGPAPMLPYLPAYNDTN 445
>01_06_0210 -
27559090-27559239,27560445-27560567,27561069-27561128,
27562045-27562068,27562313-27562653,27562684-27563731
Length = 581
Score = 28.7 bits (61), Expect = 5.2
Identities = 15/33 (45%), Positives = 16/33 (48%)
Frame = -3
Query: 210 VHRRSSRPTACPYRGTIVGTC*AATRGRFPSAR 112
V R +P AC Y I G C RGR P AR
Sbjct: 197 VFRNIPKPDACSYNTVIDGLC---RRGRLPEAR 226
>11_06_0612 + 25507208-25507269,25507690-25508275
Length = 215
Score = 28.3 bits (60), Expect = 6.8
Identities = 23/67 (34%), Positives = 25/67 (37%), Gaps = 5/67 (7%)
Frame = -3
Query: 192 RPTACPYRGTIVGTC*AATRGRFPSARARPRRCSGGRPAGV-----PRRLHCARDQVPHS 28
RPT P ++G C R R R R R GGR G R HC D
Sbjct: 64 RPTPAPPPERLLGRCNRILRRRLIRLRLRYCRRCGGRSRGAEGAEEERGRHC--DDGAEE 121
Query: 27 VHQGTGA 7
H G GA
Sbjct: 122 EHGGVGA 128
>01_06_1714 -
39368509-39369153,39369607-39369850,39369995-39370191,
39370607-39370708,39370826-39371026,39371138-39371381,
39371813-39371983,39372450-39372751
Length = 701
Score = 28.3 bits (60), Expect = 6.8
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -3
Query: 87 GRPAGVPRRLHCARDQVP 34
G+P GV R L CA DQ+P
Sbjct: 59 GQPGGVTRLLSCAADQLP 76
>07_03_1607 +
28119886-28120239,28121097-28121153,28121377-28121464,
28121557-28121686,28121783-28121962,28122291-28122759
Length = 425
Score = 27.9 bits (59), Expect = 9.0
Identities = 11/19 (57%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
Frame = -3
Query: 69 PRRLHCARDQVPHS-VHQG 16
PRR+HCA D +P S + QG
Sbjct: 272 PRRMHCAMDSIPVSAIEQG 290
>03_02_0257 + 6907997-6908504,6909316-6909348,6910163-6910308
Length = 228
Score = 27.9 bits (59), Expect = 9.0
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = -3
Query: 135 RGRFPSARARPRRCSGGRPAGVPRR 61
RG + R RP R GG AG PRR
Sbjct: 40 RGSATARRGRPARRGGGGVAGCPRR 64
>01_06_1207 + 35414292-35414918
Length = 208
Score = 27.9 bits (59), Expect = 9.0
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Frame = +2
Query: 362 VPSASDTENLFFVLTYIGRDLETQLPGDLERLLTAVRDAFLNTAAAPSIGVLYCSS*SFT 541
+P+ S E L VL R L ++ G RL ++ AAAP++ V+ S
Sbjct: 105 LPATSSRERLE-VLDDDRRVLSFRIVGGEHRLANYRSVTTVHEAAAPAMAVVVESYVVDV 163
Query: 542 HPGGSYQDAQFFI-TILRPN 598
PG ++++ + F+ TI+R N
Sbjct: 164 PPGNTWEETRVFVDTIVRCN 183
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,314,651
Number of Sequences: 37544
Number of extensions: 519351
Number of successful extensions: 1781
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1781
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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