Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0121.Seq
         (743 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR954256-3|CAJ14144.1|  659|Anopheles gambiae cyclin protein.          26   1.1  
AJ130951-1|CAA10260.1|  189|Anopheles gambiae SG3 protein protein.     25   2.5  
M93690-1|AAA29364.1|  613|Anopheles gambiae ORF1 protein.              25   3.3  
AJ439353-8|CAD27930.1| 1039|Anopheles gambiae putative DNA topoi...    25   3.3  
AY263177-1|AAP78792.1|  699|Anopheles gambiae TmcC-like protein ...    24   4.3  
AF008575-1|AAB87764.1|  525|Anopheles gambiae chitinase protein.       24   4.3  
AY578810-1|AAT07315.1|  897|Anopheles gambiae smurf protein.           24   5.7  
AF444783-1|AAL37904.1| 1356|Anopheles gambiae Trex protein.            24   5.7  
AB090813-1|BAC57901.1|  724|Anopheles gambiae gag-like protein p...    23   7.5  
U29486-1|AAC46995.1|  695|Anopheles gambiae ATP-binding-cassette...    23   10.0 
U29485-1|AAC46994.1|  695|Anopheles gambiae ATP-binding-cassette...    23   10.0 
U29484-1|AAC47423.1|  673|Anopheles gambiae ATP-binding-cassette...    23   10.0 
M93691-1|AAA29366.1|  574|Anopheles gambiae protein ( Anopheles ...    23   10.0 

>CR954256-3|CAJ14144.1|  659|Anopheles gambiae cyclin protein.
          Length = 659

 Score = 26.2 bits (55), Expect = 1.1
 Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
 Frame = -3

Query: 252 TSPART-TGTPSTEVVHRRSSRPTACPYRGTIVGTC*AATRGRFPSARARPRRC 94
           TS +R+ T  P+   V  R +R T  P R           R R   ARAR RRC
Sbjct: 453 TSRSRSRTPLPARGHVRARLTRRTIPPTRVAAAAAAPEGRRRRRAIARARRRRC 506


>AJ130951-1|CAA10260.1|  189|Anopheles gambiae SG3 protein protein.
          Length = 189

 Score = 25.0 bits (52), Expect = 2.5
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +2

Query: 29  LWGTWSRAQWSRRGTPAGRPPLHRR 103
           ++G   R  WS  G P  RPP H R
Sbjct: 75  IFGRPGRPWWSVPGIPPFRPPWHPR 99


>M93690-1|AAA29364.1|  613|Anopheles gambiae ORF1 protein.
          Length = 613

 Score = 24.6 bits (51), Expect = 3.3
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 245 QQERQERHQPRSSTADHRAQQ 183
           QQ++Q++HQ R      R QQ
Sbjct: 262 QQQQQQQHQQREQQQQQRVQQ 282


>AJ439353-8|CAD27930.1| 1039|Anopheles gambiae putative DNA
           topoisomerase protein.
          Length = 1039

 Score = 24.6 bits (51), Expect = 3.3
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -1

Query: 245 QQERQERHQPRSSTADHRAQQLVP 174
           QQ++Q RH P+     H  QQ  P
Sbjct: 611 QQQQQARHLPQQQAIHHIHQQQYP 634


>AY263177-1|AAP78792.1|  699|Anopheles gambiae TmcC-like protein
           protein.
          Length = 699

 Score = 24.2 bits (50), Expect = 4.3
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -2

Query: 196 IAPNSLSLSWYHCWHVLSSDSRKVSVCSRST 104
           I   +L +SW   W V SS S++ ++   ST
Sbjct: 193 IGNRTLYMSWPSSWSVFSSASQRGAISFAST 223


>AF008575-1|AAB87764.1|  525|Anopheles gambiae chitinase protein.
          Length = 525

 Score = 24.2 bits (50), Expect = 4.3
 Identities = 22/69 (31%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
 Frame = -3

Query: 249 SPARTTGTPSTEVVHRRSSRPTACPYRGTIVGTC*AATRGRF-PSARARPRRCSGGRPAG 73
           +P  TT TP T      +  PT+     T   T      G   P +   P  C+GGR   
Sbjct: 421 APGTTTTTP-TGANPGTTQPPTSDAPNHTTTSTTTEGNPGTTRPPSGDGP--CAGGRYGF 477

Query: 72  VPRRLHCAR 46
           VP   +CAR
Sbjct: 478 VPHPTNCAR 486


>AY578810-1|AAT07315.1|  897|Anopheles gambiae smurf protein.
          Length = 897

 Score = 23.8 bits (49), Expect = 5.7
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +2

Query: 53  QWSRRGTPAGRPPLHRRGRARA 118
           QWSR   PAG PP+ + G   A
Sbjct: 188 QWSRPTEPAG-PPVRQSGNNNA 208


>AF444783-1|AAL37904.1| 1356|Anopheles gambiae Trex protein.
          Length = 1356

 Score = 23.8 bits (49), Expect = 5.7
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -1

Query: 245  QQERQERHQPRSSTADHR 192
            QQ++Q++HQP S+ A  R
Sbjct: 1319 QQQQQQQHQPPSTQAQLR 1336


>AB090813-1|BAC57901.1|  724|Anopheles gambiae gag-like protein
           protein.
          Length = 724

 Score = 23.4 bits (48), Expect = 7.5
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -1

Query: 245 QQERQERHQPRSSTADHRAQQL 180
           QQ++Q++ QPR S    +  QL
Sbjct: 370 QQQQQQQQQPRQSLPHRKQTQL 391


>U29486-1|AAC46995.1|  695|Anopheles gambiae ATP-binding-cassette
           protein protein.
          Length = 695

 Score = 23.0 bits (47), Expect = 10.0
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -2

Query: 415 AYVRQYEEQILSITSRRHRLPDAVL 341
           AYV+Q +  I S+T+R H L  A+L
Sbjct: 179 AYVQQDDLFIPSLTTREHLLFQAML 203


>U29485-1|AAC46994.1|  695|Anopheles gambiae ATP-binding-cassette
           protein protein.
          Length = 695

 Score = 23.0 bits (47), Expect = 10.0
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -2

Query: 415 AYVRQYEEQILSITSRRHRLPDAVL 341
           AYV+Q +  I S+T+R H L  A+L
Sbjct: 179 AYVQQDDLFIPSLTTREHLLFQAML 203


>U29484-1|AAC47423.1|  673|Anopheles gambiae ATP-binding-cassette
           protein protein.
          Length = 673

 Score = 23.0 bits (47), Expect = 10.0
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -2

Query: 415 AYVRQYEEQILSITSRRHRLPDAVL 341
           AYV+Q +  I S+T+R H L  A+L
Sbjct: 157 AYVQQDDLFIPSLTTREHLLFQAML 181


>M93691-1|AAA29366.1|  574|Anopheles gambiae protein ( Anopheles
           gambiae RT2 retroposon. ).
          Length = 574

 Score = 23.0 bits (47), Expect = 10.0
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 114 EQTETFLESLLNTCQQWYHDRDKLLGAMIGGGRP 215
           E+ E  +E L    Q+     + LL A +GGG+P
Sbjct: 164 EKLEAQMEKLAAAHQRDRDVLNSLLAAKVGGGQP 197


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 798,957
Number of Sequences: 2352
Number of extensions: 17349
Number of successful extensions: 48
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 76507752
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)