Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0121.Seq
         (743 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75533-3|CAA99822.1|  868|Caenorhabditis elegans Hypothetical pr...    29   2.6  
U00037-6|AAA50658.1|  419|Caenorhabditis elegans Osmotic avoidan...    29   2.6  
U41993-1|AAO12433.1|  390|Caenorhabditis elegans Hypothetical pr...    29   3.5  
AF022971-7|AAG23973.2|  226|Caenorhabditis elegans Hypothetical ...    29   4.6  

>Z75533-3|CAA99822.1|  868|Caenorhabditis elegans Hypothetical
           protein C54G4.4 protein.
          Length = 868

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = -2

Query: 259 LAYISSKNDRNAINRGRPPPII---APNSLSLSWYHCWHVLSSDSRKVSVC 116
           L Y+     + A +RGRPP ++    P SLSL   H   +  ++S   +VC
Sbjct: 30  LLYLPPLTWKGAQSRGRPPRVVRSSPPLSLSLRGSHSCSLTGANSSATTVC 80


>U00037-6|AAA50658.1|  419|Caenorhabditis elegans Osmotic avoidance
           abnormal protein10 protein.
          Length = 419

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/24 (54%), Positives = 18/24 (75%)
 Frame = -3

Query: 252 TSPARTTGTPSTEVVHRRSSRPTA 181
           TSPA+TT T +T V  + S++PTA
Sbjct: 65  TSPAKTTTTTTTVVTQKVSNQPTA 88


>U41993-1|AAO12433.1|  390|Caenorhabditis elegans Hypothetical
           protein F44A2.5b protein.
          Length = 390

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = +1

Query: 508 RRTLLQLIELHASRWQLPGCAVLYYY 585
           R+ +L L+EL AS W+LP  A  YY+
Sbjct: 360 RKMILLLLELGASGWKLPTDANEYYF 385


>AF022971-7|AAG23973.2|  226|Caenorhabditis elegans Hypothetical
           protein C31B8.2 protein.
          Length = 226

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -2

Query: 214 GRPPPIIAPNSLSLSWYHCWHVLSSDSRKVSVCSRSTT 101
           G+P  I+ PN L+++W  C  V   D+  V +   S T
Sbjct: 31  GKPLKILNPNILNITWEECIDVCWKDTSCVLIYDTSPT 68


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,365,420
Number of Sequences: 27780
Number of extensions: 382390
Number of successful extensions: 1212
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1212
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)