Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0121.Seq
         (743 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    24   1.7  
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    23   3.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.0  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   3.0  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   4.0  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   4.0  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   7.0  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = -2

Query: 604 RAIWTKDSNKELRILVAATGMREAL*AAVKYADGRSRGSIEESVS 470
           R  W+K    + R +   +GM EAL   +KY+   ++G+I  +++
Sbjct: 129 RIQWSKLQVFDCRYVTTTSGMFEALCNHIKYS--TNKGNIRSAIT 171


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +3

Query: 429 LSYLEIWSDYLQPSETLSSILPRLLPSAYFTA 524
           +SY  ++  Y+QPS T S  L +++ S ++TA
Sbjct: 128 ISYGTLFFIYVQPSATFSLDLNKVV-SVFYTA 158


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = +1

Query: 529  IELHASRWQLPGCAVLYYYPSSK 597
            I LH + W   GC ++Y+    K
Sbjct: 1477 ITLHLNAWSDGGCPMIYFVVEHK 1499


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = -1

Query: 251 HLQQERQERHQPRSSTADHRAQQ 183
           +LQQ++Q+ HQ   S+++H + Q
Sbjct: 98  YLQQQQQQHHQ--DSSSEHASNQ 118


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -2

Query: 262 QLAYISSKNDRNAINRGRPPPIIAPNS 182
           Q+   S  N R A +RG  PP+I  NS
Sbjct: 218 QVVVSSVANVRIADHRGVMPPVILENS 244


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -2

Query: 262 QLAYISSKNDRNAINRGRPPPIIAPNS 182
           Q+   S  N R A +RG  PP+I  NS
Sbjct: 218 QVVVSSVANVRIADHRGVMPPVILENS 244


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -1

Query: 245  QQERQERHQPRSSTADHRAQQLVP 174
            QQ++Q++ QP+  +   + QQ  P
Sbjct: 1508 QQQQQQQQQPQQQSQQPQQQQPQP 1531


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,481
Number of Sequences: 438
Number of extensions: 5180
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23266665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)