Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0120X.Seq
(346 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p... 76 1e-15
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 75 3e-15
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M... 63 1e-11
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 53 1e-08
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc... 45 4e-06
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ... 26 1.4
SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces... 25 3.3
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe... 25 3.3
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 25 4.4
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S... 24 5.8
SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces pomb... 24 5.8
>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 647
Score = 76.2 bits (179), Expect = 1e-15
Identities = 41/73 (56%), Positives = 43/73 (58%)
Frame = +2
Query: 38 ILHGDKSEEVQDXXXXXXXXXXXGIETAGGVMTTLIKRNXXXXXXXXXXXXXYSYNQPGV 217
+L GD SE+ QD GIETAGGVMT LIKRN YS NQPGV
Sbjct: 377 VLTGDTSEKTQDLLLLDVAPLSMGIETAGGVMTPLIKRNTTIPTKKSEIFSTYSDNQPGV 436
Query: 218 LIQVFEGERAMTK 256
LIQVFEGERA TK
Sbjct: 437 LIQVFEGERARTK 449
Score = 62.9 bits (146), Expect = 1e-11
Identities = 27/31 (87%), Positives = 30/31 (96%)
Frame = +1
Query: 253 QDNNLLGKFELTGIPPAPRGVPQIEVTFDID 345
+D NLLGKFEL+GIPPAPRGVPQIEVTFD+D
Sbjct: 449 KDCNLLGKFELSGIPPAPRGVPQIEVTFDVD 479
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 74.9 bits (176), Expect = 3e-15
Identities = 41/73 (56%), Positives = 43/73 (58%)
Frame = +2
Query: 38 ILHGDKSEEVQDXXXXXXXXXXXGIETAGGVMTTLIKRNXXXXXXXXXXXXXYSYNQPGV 217
IL GD SE+ QD GIETAGGVMT LIKRN Y+ NQPGV
Sbjct: 377 ILVGDTSEKTQDLLLLDVAPLSLGIETAGGVMTPLIKRNTTIPTKKSEVFSTYADNQPGV 436
Query: 218 LIQVFEGERAMTK 256
LIQVFEGERA TK
Sbjct: 437 LIQVFEGERARTK 449
Score = 62.9 bits (146), Expect = 1e-11
Identities = 27/31 (87%), Positives = 30/31 (96%)
Frame = +1
Query: 253 QDNNLLGKFELTGIPPAPRGVPQIEVTFDID 345
+D NLLGKFEL+GIPPAPRGVPQIEVTFD+D
Sbjct: 449 KDCNLLGKFELSGIPPAPRGVPQIEVTFDVD 479
>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 663
Score = 62.9 bits (146), Expect = 1e-11
Identities = 26/31 (83%), Positives = 30/31 (96%)
Frame = +1
Query: 253 QDNNLLGKFELTGIPPAPRGVPQIEVTFDID 345
+DNNLLGKF+L GIPPAPRGVPQIEVTF++D
Sbjct: 478 KDNNLLGKFDLRGIPPAPRGVPQIEVTFEVD 508
Score = 46.8 bits (106), Expect = 9e-07
Identities = 26/50 (52%), Positives = 28/50 (56%)
Frame = +2
Query: 107 GIETAGGVMTTLIKRNXXXXXXXXXXXXXYSYNQPGVLIQVFEGERAMTK 256
GIET GGVMT LI RN NQ VLIQV+EGER +TK
Sbjct: 429 GIETTGGVMTKLIGRNTPIPTRKSQIFSTAVDNQNTVLIQVYEGERTLTK 478
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 53.2 bits (122), Expect = 1e-08
Identities = 21/31 (67%), Positives = 27/31 (87%)
Frame = +1
Query: 253 QDNNLLGKFELTGIPPAPRGVPQIEVTFDID 345
+DN L+G F+LTGI PAP+G PQIEV+FD+D
Sbjct: 492 RDNKLIGNFQLTGIAPAPKGQPQIEVSFDVD 522
Score = 38.3 bits (85), Expect = 3e-04
Identities = 24/70 (34%), Positives = 30/70 (42%)
Frame = +2
Query: 47 GDKSEEVQDXXXXXXXXXXXGIETAGGVMTTLIKRNXXXXXXXXXXXXXYSYNQPGVLIQ 226
G S V+D GIET GGV T LI RN + Q V I+
Sbjct: 423 GVLSGHVKDLVLLDVTPLSLGIETLGGVFTRLINRNTTIPTRKSQVFSTAADGQTAVEIR 482
Query: 227 VFEGERAMTK 256
VF+GER + +
Sbjct: 483 VFQGERELVR 492
>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 44.8 bits (101), Expect = 4e-06
Identities = 17/30 (56%), Positives = 24/30 (80%)
Frame = +1
Query: 256 DNNLLGKFELTGIPPAPRGVPQIEVTFDID 345
+N LG+F+LTGIPP PRG ++E TF++D
Sbjct: 455 ENEPLGEFQLTGIPPMPRGQAELEATFELD 484
>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 2|||Manual
Length = 827
Score = 26.2 bits (55), Expect = 1.4
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = +3
Query: 153 TLPSPLNRLRHSPPTXITNPEYSSKYLR 236
T P RLRH+P I E KYLR
Sbjct: 43 TYGQPFKRLRHAPEKYIEFLELRLKYLR 70
>SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 693
Score = 25.0 bits (52), Expect = 3.3
Identities = 17/64 (26%), Positives = 30/64 (46%)
Frame = -1
Query: 223 DEYSGLVIXVGGECLSLFSGDGSVTLDECGHDTSSSLNTEGKGCYIKQQQILHLLRLVTV 44
D+YS L + + EC+++F + D S+ N EGK ++L LL
Sbjct: 343 DQYS-LHLTMAQECMNIFEKQQLNLIGAIEQDLSTGSNVEGKVPRSVLSELLPLLDEGNA 401
Query: 43 QDSS 32
++S+
Sbjct: 402 EEST 405
>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 972
Score = 25.0 bits (52), Expect = 3.3
Identities = 9/29 (31%), Positives = 18/29 (62%)
Frame = -1
Query: 253 GHSTLTLKYLDEYSGLVIXVGGECLSLFS 167
G+ L +KY + ++G+ +CL++FS
Sbjct: 268 GYLNLWMKYAEYFTGISEFTFNDCLNMFS 296
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 24.6 bits (51), Expect = 4.4
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +3
Query: 159 PSPLNRLRHSPPTXITNPEYSSKY 230
P+PL L+++P + + NP + S Y
Sbjct: 1336 PTPLLDLQNAPVSSLNNPSFISLY 1359
>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 24.2 bits (50), Expect = 5.8
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +3
Query: 120 LEVS*PHSSSVTLPSPLNRLRHSPPTXITN 209
L++S P +S + P+P + H PP N
Sbjct: 618 LQISAPLETSQSPPTPRTKPSHKPPVSYKN 647
>SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 542
Score = 24.2 bits (50), Expect = 5.8
Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 3/26 (11%)
Frame = +1
Query: 250 DQDNNLLGK---FELTGIPPAPRGVP 318
D+ +NL K F+ +PP P+G P
Sbjct: 62 DEKHNLFPKKAHFDAVALPPIPKGAP 87
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,312,155
Number of Sequences: 5004
Number of extensions: 22639
Number of successful extensions: 81
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 102111100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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