Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0120X.Seq
(346 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45540| Best HMM Match : HSP70 (HMM E-Value=0) 77 3e-15
SB_56180| Best HMM Match : No HMM Matches (HMM E-Value=.) 73 6e-14
SB_8490| Best HMM Match : HSP70 (HMM E-Value=0) 68 2e-12
SB_38725| Best HMM Match : No HMM Matches (HMM E-Value=.) 60 4e-10
SB_45647| Best HMM Match : HSP70 (HMM E-Value=0) 59 1e-09
SB_37014| Best HMM Match : HSP70 (HMM E-Value=5.9e-16) 37 0.004
SB_8849| Best HMM Match : F-box (HMM E-Value=0.86) 30 0.58
SB_25894| Best HMM Match : Coatomer_WDAD (HMM E-Value=0) 28 2.3
SB_29231| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.1
SB_31839| Best HMM Match : Exo_endo_phos (HMM E-Value=1.3e-11) 27 3.1
SB_48878| Best HMM Match : Fibrinogen_C (HMM E-Value=0) 27 4.1
SB_21939| Best HMM Match : F-box (HMM E-Value=0.001) 27 4.1
SB_7472| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.1
SB_36481| Best HMM Match : DUF922 (HMM E-Value=1.8) 26 7.1
SB_54692| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.1
SB_52144| Best HMM Match : DUF280 (HMM E-Value=6.3) 26 7.1
SB_49237| Best HMM Match : GAT (HMM E-Value=3.4) 26 7.1
SB_12151| Best HMM Match : AAA_5 (HMM E-Value=0.00042) 26 9.4
SB_39118| Best HMM Match : 7tm_3 (HMM E-Value=0.55) 26 9.4
SB_15859| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.4
>SB_45540| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 1097
Score = 77.4 bits (182), Expect = 3e-15
Identities = 40/72 (55%), Positives = 44/72 (61%)
Frame = +2
Query: 38 ILHGDKSEEVQDXXXXXXXXXXXGIETAGGVMTTLIKRNXXXXXXXXXXXXXYSYNQPGV 217
ILHGDK + V+D GIETAGGVM+ LIKRN YS NQPGV
Sbjct: 381 ILHGDKDDTVKDLLLLDVAPLSMGIETAGGVMSVLIKRNSTIPTKQTQTFTTYSDNQPGV 440
Query: 218 LIQVFEGERAMT 253
LIQVFEGER+MT
Sbjct: 441 LIQVFEGERSMT 452
Score = 65.7 bits (153), Expect = 1e-11
Identities = 29/29 (100%), Positives = 29/29 (100%)
Frame = +1
Query: 259 NNLLGKFELTGIPPAPRGVPQIEVTFDID 345
NNLLGKFELTGIPPAPRGVPQIEVTFDID
Sbjct: 455 NNLLGKFELTGIPPAPRGVPQIEVTFDID 483
>SB_56180| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 746
Score = 72.9 bits (171), Expect = 6e-14
Identities = 38/73 (52%), Positives = 42/73 (57%)
Frame = +2
Query: 38 ILHGDKSEEVQDXXXXXXXXXXXGIETAGGVMTTLIKRNXXXXXXXXXXXXXYSYNQPGV 217
ILHGDKSE QD G+ETAGGVMT IKRN YS NQ V
Sbjct: 473 ILHGDKSEATQDLLLLDVAPLTLGLETAGGVMTAAIKRNTTIPTKQTQTFTTYSDNQTSV 532
Query: 218 LIQVFEGERAMTK 256
LIQV+EGER++TK
Sbjct: 533 LIQVYEGERSLTK 545
Score = 65.3 bits (152), Expect = 1e-11
Identities = 27/31 (87%), Positives = 31/31 (100%)
Frame = +1
Query: 253 QDNNLLGKFELTGIPPAPRGVPQIEVTFDID 345
+DNNLLGKFEL+GIPPAPRGVPQI+VTFD+D
Sbjct: 545 KDNNLLGKFELSGIPPAPRGVPQIDVTFDVD 575
>SB_8490| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 640
Score = 68.1 bits (159), Expect = 2e-12
Identities = 37/73 (50%), Positives = 42/73 (57%)
Frame = +2
Query: 38 ILHGDKSEEVQDXXXXXXXXXXXGIETAGGVMTTLIKRNXXXXXXXXXXXXXYSYNQPGV 217
IL GDKS+EV+D GIETAG VMT LI+RN YS NQP V
Sbjct: 380 ILSGDKSDEVKDVLLVDVAPLSLGIETAGEVMTKLIERNARIPTKATQTFTTYSDNQPAV 439
Query: 218 LIQVFEGERAMTK 256
I+VFEGER +TK
Sbjct: 440 TIRVFEGERPLTK 452
Score = 62.9 bits (146), Expect = 7e-11
Identities = 27/29 (93%), Positives = 29/29 (100%)
Frame = +1
Query: 259 NNLLGKFELTGIPPAPRGVPQIEVTFDID 345
NNLLGKF+L+GIPPAPRGVPQIEVTFDID
Sbjct: 454 NNLLGKFDLSGIPPAPRGVPQIEVTFDID 482
>SB_38725| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 766
Score = 60.5 bits (140), Expect = 4e-10
Identities = 25/30 (83%), Positives = 28/30 (93%)
Frame = +1
Query: 256 DNNLLGKFELTGIPPAPRGVPQIEVTFDID 345
DN LLG+F+L GIPPAPRGVPQ+EVTFDID
Sbjct: 258 DNKLLGQFQLVGIPPAPRGVPQVEVTFDID 287
Score = 37.1 bits (82), Expect = 0.004
Identities = 23/63 (36%), Positives = 28/63 (44%)
Frame = +2
Query: 62 EVQDXXXXXXXXXXXGIETAGGVMTTLIKRNXXXXXXXXXXXXXYSYNQPGVLIQVFEGE 241
+V+D GIET GGV T LI RN + Q V I+VF+GE
Sbjct: 193 DVKDVLLLDVTPLSLGIETLGGVFTKLITRNTTIPTKKSQVFSTAADGQTQVEIKVFQGE 252
Query: 242 RAM 250
R M
Sbjct: 253 REM 255
>SB_45647| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 1327
Score = 58.8 bits (136), Expect = 1e-09
Identities = 25/31 (80%), Positives = 29/31 (93%)
Frame = +1
Query: 253 QDNNLLGKFELTGIPPAPRGVPQIEVTFDID 345
+DN+ LGKF+L GIPPAPRGVPQIEVTF+ID
Sbjct: 1146 KDNHPLGKFDLNGIPPAPRGVPQIEVTFEID 1176
Score = 48.8 bits (111), Expect = 1e-06
Identities = 27/50 (54%), Positives = 28/50 (56%)
Frame = +2
Query: 107 GIETAGGVMTTLIKRNXXXXXXXXXXXXXYSYNQPGVLIQVFEGERAMTK 256
GIET GGVMT LI RN + NQ V IQVFEGER MTK
Sbjct: 1097 GIETVGGVMTKLISRNTVIPTKKSQVFSTAADNQNTVTIQVFEGERPMTK 1146
>SB_37014| Best HMM Match : HSP70 (HMM E-Value=5.9e-16)
Length = 212
Score = 37.1 bits (82), Expect = 0.004
Identities = 23/63 (36%), Positives = 28/63 (44%)
Frame = +2
Query: 62 EVQDXXXXXXXXXXXGIETAGGVMTTLIKRNXXXXXXXXXXXXXYSYNQPGVLIQVFEGE 241
+V+D GIET GGV T LI RN + Q V I+VF+GE
Sbjct: 138 DVKDVLLLDVTPLSLGIETLGGVFTKLITRNTTIPTKKSQVFSTAADGQTQVEIKVFQGE 197
Query: 242 RAM 250
R M
Sbjct: 198 REM 200
>SB_8849| Best HMM Match : F-box (HMM E-Value=0.86)
Length = 1222
Score = 29.9 bits (64), Expect = 0.58
Identities = 15/45 (33%), Positives = 29/45 (64%)
Frame = -1
Query: 163 DGSVTLDECGHDTSSSLNTEGKGCYIKQQQILHLLRLVTVQDSSL 29
DG+V LDE + +++SL++ G C + ++ + + TV++SSL
Sbjct: 1160 DGAVLLDEWNYGSNASLSSCGSTC--SESRLSYFIGQDTVEESSL 1202
>SB_25894| Best HMM Match : Coatomer_WDAD (HMM E-Value=0)
Length = 1066
Score = 27.9 bits (59), Expect = 2.3
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +3
Query: 156 LPSPLNRLRHSPPTXITNP 212
LP N + H+PPT + NP
Sbjct: 760 LPDTANEIEHAPPTTVINP 778
>SB_29231| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2271
Score = 27.5 bits (58), Expect = 3.1
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +1
Query: 253 QDNNLLGKFELTGIPPAPRGVPQ 321
QD NL+G +L + P G+P+
Sbjct: 1538 QDRNLMGNIQLDPVEPGAEGIPE 1560
>SB_31839| Best HMM Match : Exo_endo_phos (HMM E-Value=1.3e-11)
Length = 887
Score = 27.5 bits (58), Expect = 3.1
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +1
Query: 253 QDNNLLGKFELTGIPPAPRGVPQ 321
QD NL+G +L + P G+P+
Sbjct: 198 QDRNLMGNIQLDPVEPGAEGIPE 220
>SB_48878| Best HMM Match : Fibrinogen_C (HMM E-Value=0)
Length = 1213
Score = 27.1 bits (57), Expect = 4.1
Identities = 10/33 (30%), Positives = 16/33 (48%)
Frame = -1
Query: 187 ECLSLFSGDGSVTLDECGHDTSSSLNTEGKGCY 89
+C+ + S DG CGH T+ + G C+
Sbjct: 728 DCVYMSSSDGKWRFKNCGHTTAGYICKRGLMCH 760
>SB_21939| Best HMM Match : F-box (HMM E-Value=0.001)
Length = 909
Score = 27.1 bits (57), Expect = 4.1
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 244 CYDQDNNLLGKFELTGIPPAPRGVP 318
C+D DN ++E T +PP P+ VP
Sbjct: 306 CFD-DNIKSAEYETTSLPPPPKFVP 329
>SB_7472| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 148
Score = 27.1 bits (57), Expect = 4.1
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +1
Query: 253 QDNNLLGKFELTGIPPAPRGVPQ 321
QD NL+G +L + P G+P+
Sbjct: 50 QDRNLMGNIKLDPVEPGAEGIPE 72
>SB_36481| Best HMM Match : DUF922 (HMM E-Value=1.8)
Length = 1150
Score = 26.2 bits (55), Expect = 7.1
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -2
Query: 150 RLMSVVMTPPAVSIPRERGV 91
R + +V PPA S+PRE+G+
Sbjct: 243 RFVKIVEDPPAWSMPREQGL 262
>SB_54692| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 101
Score = 26.2 bits (55), Expect = 7.1
Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
Frame = +3
Query: 159 PSPLNRLRHSPPTXITNPEYS---SKYLRV 239
P P+ RLRH+ I +PE S SK LRV
Sbjct: 61 PRPVIRLRHAQLAEIVDPEQSMSTSKMLRV 90
>SB_52144| Best HMM Match : DUF280 (HMM E-Value=6.3)
Length = 305
Score = 26.2 bits (55), Expect = 7.1
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -2
Query: 150 RLMSVVMTPPAVSIPRERGV 91
R + +V PPA S+PRE+G+
Sbjct: 139 RFVKIVEDPPAWSMPREQGL 158
>SB_49237| Best HMM Match : GAT (HMM E-Value=3.4)
Length = 623
Score = 26.2 bits (55), Expect = 7.1
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -1
Query: 286 SARIYRASCYLGHSTLT 236
++R YR CY GH T+T
Sbjct: 60 TSRYYRTPCYNGHPTIT 76
>SB_12151| Best HMM Match : AAA_5 (HMM E-Value=0.00042)
Length = 4607
Score = 25.8 bits (54), Expect = 9.4
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 265 LLGKFELTGIPPAPRGVPQIEVTFDI 342
+L KF+ I P+PRG Q ++T D+
Sbjct: 4023 VLEKFQHCKIKPSPRGDAQTQITEDL 4048
>SB_39118| Best HMM Match : 7tm_3 (HMM E-Value=0.55)
Length = 111
Score = 25.8 bits (54), Expect = 9.4
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -1
Query: 265 SCYLGHSTLTLKYLDEYSGLVIXVG 191
SC+ HST L + Y GL++ VG
Sbjct: 15 SCHSKHSTTWLYIIMGYKGLILLVG 39
>SB_15859| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 970
Score = 25.8 bits (54), Expect = 9.4
Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Frame = -1
Query: 163 DGSVTLDECGHDTSSSLNT--EGK 98
+ SV L +C +DT ++NT EGK
Sbjct: 88 EASVALHDCNYDTEQAINTLFEGK 111
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,522,257
Number of Sequences: 59808
Number of extensions: 200224
Number of successful extensions: 609
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 605
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 510674393
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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