Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0120X.Seq
         (346 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z80223-1|CAB02319.1|  640|Caenorhabditis elegans Hypothetical pr...    82   1e-16
M18540-1|AAA28078.1|  640|Caenorhabditis elegans protein ( C.ele...    82   1e-16
Z83108-5|CAB05508.1|  645|Caenorhabditis elegans Hypothetical pr...    67   4e-12
Z83108-4|CAB05507.1|  645|Caenorhabditis elegans Hypothetical pr...    67   4e-12
Z81467-1|CAB03871.1|  643|Caenorhabditis elegans Hypothetical pr...    66   8e-12
U56965-1|AAB52671.1|  661|Caenorhabditis elegans Heat shock prot...    60   3e-10
M26604-1|AAA28074.1|  661|Caenorhabditis elegans protein ( C. el...    60   3e-10
M28528-1|AAA28076.1|  288|Caenorhabditis elegans protein ( C.ele...    58   2e-09
AF000264-1|AAC71123.1|  657|Caenorhabditis elegans Heat shock pr...    58   2e-09
U88315-3|AAB42371.1|  657|Caenorhabditis elegans Heat shock prot...    57   3e-09
X07678-1|CAA30525.1|  487|Caenorhabditis elegans hsp6F protein.        38   0.001
Z68342-4|CAA92776.1| 1000|Caenorhabditis elegans Hypothetical pr...    26   6.3  
Z74043-10|CAA98542.2|  653|Caenorhabditis elegans Hypothetical p...    26   8.3  
U12964-7|AAA91218.2|  356|Caenorhabditis elegans Rhomboid (droso...    26   8.3  

>Z80223-1|CAB02319.1|  640|Caenorhabditis elegans Hypothetical
           protein F26D10.3 protein.
          Length = 640

 Score = 81.8 bits (193), Expect = 1e-16
 Identities = 44/73 (60%), Positives = 45/73 (61%)
 Frame = +2

Query: 38  ILHGDKSEEVQDXXXXXXXXXXXGIETAGGVMTTLIKRNXXXXXXXXXXXXXYSYNQPGV 217
           IL GDKSE VQD           GIETAGGVMT LIKRN             YS NQPGV
Sbjct: 380 ILSGDKSEAVQDLLLLDVAPLSLGIETAGGVMTALIKRNTTIPTKTAQTFTTYSDNQPGV 439

Query: 218 LIQVFEGERAMTK 256
           LIQV+EGERAMTK
Sbjct: 440 LIQVYEGERAMTK 452



 Score = 66.9 bits (156), Expect = 4e-12
 Identities = 29/31 (93%), Positives = 31/31 (100%)
 Frame = +1

Query: 253 QDNNLLGKFELTGIPPAPRGVPQIEVTFDID 345
           +DNNLLGKFEL+GIPPAPRGVPQIEVTFDID
Sbjct: 452 KDNNLLGKFELSGIPPAPRGVPQIEVTFDID 482


>M18540-1|AAA28078.1|  640|Caenorhabditis elegans protein (
           C.elegans heat shockprotein 70A gene, complete cds. ).
          Length = 640

 Score = 81.8 bits (193), Expect = 1e-16
 Identities = 44/73 (60%), Positives = 45/73 (61%)
 Frame = +2

Query: 38  ILHGDKSEEVQDXXXXXXXXXXXGIETAGGVMTTLIKRNXXXXXXXXXXXXXYSYNQPGV 217
           IL GDKSE VQD           GIETAGGVMT LIKRN             YS NQPGV
Sbjct: 380 ILSGDKSEAVQDLLLLDVAPLSLGIETAGGVMTALIKRNTTIPTKTAQTFTTYSDNQPGV 439

Query: 218 LIQVFEGERAMTK 256
           LIQV+EGERAMTK
Sbjct: 440 LIQVYEGERAMTK 452



 Score = 66.9 bits (156), Expect = 4e-12
 Identities = 29/31 (93%), Positives = 31/31 (100%)
 Frame = +1

Query: 253 QDNNLLGKFELTGIPPAPRGVPQIEVTFDID 345
           +DNNLLGKFEL+GIPPAPRGVPQIEVTFDID
Sbjct: 452 KDNNLLGKFELSGIPPAPRGVPQIEVTFDID 482


>Z83108-5|CAB05508.1|  645|Caenorhabditis elegans Hypothetical
           protein F44E5.5 protein.
          Length = 645

 Score = 66.9 bits (156), Expect = 4e-12
 Identities = 35/73 (47%), Positives = 41/73 (56%)
 Frame = +2

Query: 38  ILHGDKSEEVQDXXXXXXXXXXXGIETAGGVMTTLIKRNXXXXXXXXXXXXXYSYNQPGV 217
           +L G K E ++D           GIETAGGVMT LI RN             Y+ NQPGV
Sbjct: 380 VLSGVKDETIKDVLLVDVAPLSLGIETAGGVMTNLIDRNTRIPTKACKTFTTYADNQPGV 439

Query: 218 LIQVFEGERAMTK 256
            IQV+EGERAMT+
Sbjct: 440 SIQVYEGERAMTR 452



 Score = 60.1 bits (139), Expect = 4e-10
 Identities = 26/31 (83%), Positives = 29/31 (93%)
 Frame = +1

Query: 253 QDNNLLGKFELTGIPPAPRGVPQIEVTFDID 345
           +DN+ LG FEL+GIPPAPRGVPQIEVTFDID
Sbjct: 452 RDNHRLGTFELSGIPPAPRGVPQIEVTFDID 482


>Z83108-4|CAB05507.1|  645|Caenorhabditis elegans Hypothetical
           protein F44E5.4 protein.
          Length = 645

 Score = 66.9 bits (156), Expect = 4e-12
 Identities = 35/73 (47%), Positives = 41/73 (56%)
 Frame = +2

Query: 38  ILHGDKSEEVQDXXXXXXXXXXXGIETAGGVMTTLIKRNXXXXXXXXXXXXXYSYNQPGV 217
           +L G K E ++D           GIETAGGVMT LI RN             Y+ NQPGV
Sbjct: 380 VLSGVKDETIKDVLLVDVAPLSLGIETAGGVMTNLIDRNTRIPTKACKTFTTYADNQPGV 439

Query: 218 LIQVFEGERAMTK 256
            IQV+EGERAMT+
Sbjct: 440 SIQVYEGERAMTR 452



 Score = 60.1 bits (139), Expect = 4e-10
 Identities = 26/31 (83%), Positives = 29/31 (93%)
 Frame = +1

Query: 253 QDNNLLGKFELTGIPPAPRGVPQIEVTFDID 345
           +DN+ LG FEL+GIPPAPRGVPQIEVTFDID
Sbjct: 452 RDNHRLGTFELSGIPPAPRGVPQIEVTFDID 482


>Z81467-1|CAB03871.1|  643|Caenorhabditis elegans Hypothetical
           protein C12C8.1 protein.
          Length = 643

 Score = 65.7 bits (153), Expect = 8e-12
 Identities = 34/73 (46%), Positives = 41/73 (56%)
 Frame = +2

Query: 38  ILHGDKSEEVQDXXXXXXXXXXXGIETAGGVMTTLIKRNXXXXXXXXXXXXXYSYNQPGV 217
           +L G K + ++D           GIETAGGVMT LI RN             Y+ NQPGV
Sbjct: 380 VLSGVKDDTIKDVLLVDVVPLSHGIETAGGVMTNLIDRNTRIPAKASKTFTTYADNQPGV 439

Query: 218 LIQVFEGERAMTK 256
            IQV+EGERAMT+
Sbjct: 440 SIQVYEGERAMTR 452



 Score = 60.1 bits (139), Expect = 4e-10
 Identities = 25/31 (80%), Positives = 29/31 (93%)
 Frame = +1

Query: 253 QDNNLLGKFELTGIPPAPRGVPQIEVTFDID 345
           +DN+ LG FELTGIPPAPRGVPQ++VTFDID
Sbjct: 452 RDNHRLGTFELTGIPPAPRGVPQVDVTFDID 482


>U56965-1|AAB52671.1|  661|Caenorhabditis elegans Heat shock protein
           protein 3 protein.
          Length = 661

 Score = 60.5 bits (140), Expect = 3e-10
 Identities = 25/31 (80%), Positives = 30/31 (96%)
 Frame = +1

Query: 253 QDNNLLGKFELTGIPPAPRGVPQIEVTFDID 345
           +DN+ LGKF+LTG+PPAPRGVPQIEVTF+ID
Sbjct: 479 KDNHQLGKFDLTGLPPAPRGVPQIEVTFEID 509



 Score = 51.6 bits (118), Expect = 1e-07
 Identities = 28/50 (56%), Positives = 29/50 (58%)
 Frame = +2

Query: 107 GIETAGGVMTTLIKRNXXXXXXXXXXXXXYSYNQPGVLIQVFEGERAMTK 256
           GIET GGVMT LI RN              + NQP V IQVFEGER MTK
Sbjct: 430 GIETVGGVMTKLIGRNTVIPTKKSQVFSTAADNQPTVTIQVFEGERPMTK 479


>M26604-1|AAA28074.1|  661|Caenorhabditis elegans protein ( C.
           elegans BiP (hsp3)gene, complete cds. ).
          Length = 661

 Score = 60.5 bits (140), Expect = 3e-10
 Identities = 25/31 (80%), Positives = 30/31 (96%)
 Frame = +1

Query: 253 QDNNLLGKFELTGIPPAPRGVPQIEVTFDID 345
           +DN+ LGKF+LTG+PPAPRGVPQIEVTF+ID
Sbjct: 479 KDNHQLGKFDLTGLPPAPRGVPQIEVTFEID 509



 Score = 51.6 bits (118), Expect = 1e-07
 Identities = 28/50 (56%), Positives = 29/50 (58%)
 Frame = +2

Query: 107 GIETAGGVMTTLIKRNXXXXXXXXXXXXXYSYNQPGVLIQVFEGERAMTK 256
           GIET GGVMT LI RN              + NQP V IQVFEGER MTK
Sbjct: 430 GIETVGGVMTKLIGRNTVIPTKKSQVFSTAADNQPTVTIQVFEGERPMTK 479


>M28528-1|AAA28076.1|  288|Caenorhabditis elegans protein (
           C.elegans heat shockprotein 4 gene, 3' end. ).
          Length = 288

 Score = 57.6 bits (133), Expect = 2e-09
 Identities = 24/30 (80%), Positives = 28/30 (93%)
 Frame = +1

Query: 256 DNNLLGKFELTGIPPAPRGVPQIEVTFDID 345
           DN+ LG F++TGIPPAPRGVPQIEVTF+ID
Sbjct: 108 DNHKLGNFDVTGIPPAPRGVPQIEVTFEID 137



 Score = 38.3 bits (85), Expect = 0.001
 Identities = 21/48 (43%), Positives = 25/48 (52%)
 Frame = +2

Query: 107 GIETAGGVMTTLIKRNXXXXXXXXXXXXXYSYNQPGVLIQVFEGERAM 250
           GIET GGVMT LI RN              + +Q  V I ++EGER M
Sbjct: 58  GIETVGGVMTKLIGRNTVIPTKKSQVFPTAADSQSAVSIVIYEGERPM 105


>AF000264-1|AAC71123.1|  657|Caenorhabditis elegans Heat shock
           protein protein 4 protein.
          Length = 657

 Score = 57.6 bits (133), Expect = 2e-09
 Identities = 24/30 (80%), Positives = 28/30 (93%)
 Frame = +1

Query: 256 DNNLLGKFELTGIPPAPRGVPQIEVTFDID 345
           DN+ LG F++TGIPPAPRGVPQIEVTF+ID
Sbjct: 477 DNHKLGNFDVTGIPPAPRGVPQIEVTFEID 506



 Score = 38.3 bits (85), Expect = 0.001
 Identities = 21/48 (43%), Positives = 25/48 (52%)
 Frame = +2

Query: 107 GIETAGGVMTTLIKRNXXXXXXXXXXXXXYSYNQPGVLIQVFEGERAM 250
           GIET GGVMT LI RN              + +Q  V I ++EGER M
Sbjct: 427 GIETVGGVMTKLIGRNTVIPTKKSQVFSTAADSQSAVSIVIYEGERPM 474


>U88315-3|AAB42371.1|  657|Caenorhabditis elegans Heat shock protein
           protein 6 protein.
          Length = 657

 Score = 57.2 bits (132), Expect = 3e-09
 Identities = 24/29 (82%), Positives = 26/29 (89%)
 Frame = +1

Query: 259 NNLLGKFELTGIPPAPRGVPQIEVTFDID 345
           N LLG+F L GIPPAPRGVPQ+EVTFDID
Sbjct: 476 NKLLGQFSLVGIPPAPRGVPQVEVTFDID 504



 Score = 38.3 bits (85), Expect = 0.001
 Identities = 21/48 (43%), Positives = 25/48 (52%)
 Frame = +2

Query: 107 GIETAGGVMTTLIKRNXXXXXXXXXXXXXYSYNQPGVLIQVFEGERAM 250
           GIET GG+MT LI RN              +  Q  V I+VF+GER M
Sbjct: 425 GIETLGGIMTKLITRNTTIPTKKSQVFSTAADGQTQVQIKVFQGEREM 472


>X07678-1|CAA30525.1|  487|Caenorhabditis elegans hsp6F protein.
          Length = 487

 Score = 38.3 bits (85), Expect = 0.001
 Identities = 21/48 (43%), Positives = 25/48 (52%)
 Frame = +2

Query: 107 GIETAGGVMTTLIKRNXXXXXXXXXXXXXYSYNQPGVLIQVFEGERAM 250
           GIET GG+MT LI RN              +  Q  V I+VF+GER M
Sbjct: 425 GIETLGGIMTKLITRNTTIPTKKSQVFSTAADGQTQVQIKVFQGEREM 472


>Z68342-4|CAA92776.1| 1000|Caenorhabditis elegans Hypothetical
           protein F38E11.5 protein.
          Length = 1000

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 19/85 (22%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
 Frame = -1

Query: 286 SARIYRASCYLGHSTLTLKYLDEYSGLVIXVGGECLSLFSGDGSVTLDECGHDTSSSLNT 107
           + R++ A+ Y   +TL    L+    +    G   +++   +GSVTL     + + S+++
Sbjct: 252 TVRLWHANTYRLETTLNYG-LERVWCIQAQKGANTIAIGYDEGSVTLKLGREEPAVSMDS 310

Query: 106 EGKGCYIKQQQILHL-LRLVTVQDS 35
            GK  + K  +I    L+ ++ ++S
Sbjct: 311 SGKILWAKHSEIQQANLKTISTEES 335


>Z74043-10|CAA98542.2|  653|Caenorhabditis elegans Hypothetical
           protein T19B10.3 protein.
          Length = 653

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
 Frame = -2

Query: 345 IDVEGDLNLRNATRRRWDPGQLEFTEQVVILVIAR--SPSNTWMSTPGW 205
           + ++ D   R A R  +        +Q V + I    +P++TW+ T GW
Sbjct: 535 LPLQEDFYFRKAMRNNYRKNVKSNQKQGVFIGILSVDAPTDTWLDTTGW 583


>U12964-7|AAA91218.2|  356|Caenorhabditis elegans Rhomboid
           (drosophila) related protein1 protein.
          Length = 356

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +1

Query: 4   GRSLWCSCPGCYL 42
           GRS+W  C GC++
Sbjct: 134 GRSIWTDCAGCFV 146


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,486,106
Number of Sequences: 27780
Number of extensions: 135510
Number of successful extensions: 335
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 331
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 451081596
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)