Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0117.Seq
         (755 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11D3.10 |||nifs homolog|Schizosaccharomyces pombe|chr 1|||Ma...    26   6.7  
SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1 ...    25   8.8  

>SPAC11D3.10 |||nifs homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 434

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -2

Query: 469 SRIDLGFSVRFFR*SVSTQVVKPPSSLRKGTIPDIPCN 356
           SR + G  V F   + S  ++K  S +RKG   +IP N
Sbjct: 356 SRFESGIRVSFGLYNTSKDIIKFISVIRKGLALNIPLN 393


>SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 581

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +2

Query: 272 RSVMEKLNLLHKSFF*RYIRDRIHVYVSV 358
           RS+   L  LH+SFF  +I D +H ++S+
Sbjct: 343 RSLNNLLEHLHQSFFFYFILDHLH-FISI 370


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,111,946
Number of Sequences: 5004
Number of extensions: 62243
Number of successful extensions: 136
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)