Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0117.Seq
         (755 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0705 - 5259949-5263887,5266207-5266509                           30   2.3  
11_06_0480 - 24081075-24081723,24083427-24084202                       29   4.0  
01_01_0355 + 2810340-2813112,2813213-2813637                           28   7.0  

>02_01_0705 - 5259949-5263887,5266207-5266509
          Length = 1413

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = +3

Query: 294  IYYTSLSSNDTSATAYTSMYRLHGISGIVPFRNEDGGLTTCVD 422
            +YY  LSSND S T    +  + G++      N DGG  T  D
Sbjct: 945  LYYLDLSSNDFSGTIPCGICGMFGLTFANFSGNRDGGTFTLAD 987


>11_06_0480 - 24081075-24081723,24083427-24084202
          Length = 474

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -3

Query: 501 DFLNVILSRSLAESILGSLYDFSGRACPHKLSNRHP 394
           D   ++L R L  S+ G L+++ G   PH LS R P
Sbjct: 37  DSRGLLLRRLLPRSVDGVLFNYVGHRRPHLLSLRRP 72


>01_01_0355 + 2810340-2813112,2813213-2813637
          Length = 1065

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +3

Query: 294 IYYTSLSSNDTSATAYTSMYRLHGISGIVPFRNE-DGGLTTCVD 422
           +Y+  + SN+ S    +S+Y L  + G     N+ DG + T +D
Sbjct: 223 LYFLDICSNNLSGALPSSLYNLSSLMGFDAGNNKLDGSIATDID 266


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,186,723
Number of Sequences: 37544
Number of extensions: 397684
Number of successful extensions: 847
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 847
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)