Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0117.Seq
         (755 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.25 
SB_11281| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_18647| Best HMM Match : SH2 (HMM E-Value=7.3e-16)                   30   2.3  
SB_39388| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.1  

>SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4529

 Score = 33.1 bits (72), Expect = 0.25
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -1

Query: 161  RRSSESGPPVNKVSTNCIIVGCHVN*RIKATRNWCN*KLQIQRTSSH 21
            ++S E+GP VNKV  N     C  N ++    N    + Q+ +T +H
Sbjct: 2569 KKSQETGPDVNKVENNIKTESCTANEQLNKLSNQQTQQQQVMQTQAH 2615


>SB_11281| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 400

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +2

Query: 137 VDHFLKTSGVRCF*SRNGPSSYRTG 211
           V H++++S VRCF  +N PSS+  G
Sbjct: 192 VTHYVRSSLVRCFVKKNKPSSFIVG 216


>SB_18647| Best HMM Match : SH2 (HMM E-Value=7.3e-16)
          Length = 720

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 18/60 (30%), Positives = 27/60 (45%)
 Frame = -2

Query: 595 WRRLVKHTTTPNDDHDHSANSAYD*EEEAATRLFKCYFVSITSRIDLGFSVRFFR*SVST 416
           W +   H TT + D  H A+  Y    +  +   K +   + S +   F+V FF  SVST
Sbjct: 498 WFKCQGHGTTTDTDVAHFAHDIYAIGTQECSLSEKDWVTKVKSELQRIFNVEFFTVSVST 557


>SB_39388| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 273

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 153 RPPVYGAFKAETDQAPIEREFRGV 224
           RPP    F+ + DQA IE E+R +
Sbjct: 183 RPPAMNQFRKQKDQAAIEGEYRAL 206



 Score = 28.3 bits (60), Expect = 7.1
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 153 RPPVYGAFKAETDQAPIEREFRGV 224
           RPP    F+ + DQA IE E+R +
Sbjct: 244 RPPAMNQFRKQKDQAAIEGEYRAL 267


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,650,556
Number of Sequences: 59808
Number of extensions: 477460
Number of successful extensions: 1044
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 978
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1044
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2058295707
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)