Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0117.Seq
         (755 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032657-13|CAB76744.1|   87|Caenorhabditis elegans Hypothetical...    29   3.6  
U13072-6|AAK31399.1|  327|Caenorhabditis elegans Hypothetical pr...    28   8.2  
AL117195-20|CAB60768.1|  388|Caenorhabditis elegans Hypothetical...    28   8.2  

>AL032657-13|CAB76744.1|   87|Caenorhabditis elegans Hypothetical
           protein Y47H9C.14 protein.
          Length = 87

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
 Frame = -2

Query: 592 RRLVKHTTTPNDDH-DHSANSAYD*EEEAATRLFKCYFVSIT-SRIDLGFSVRFFR*SVS 419
           + ++ H     ++H +H+ N+         T+  K  F+SI  SR     S+RFFR +  
Sbjct: 5   KTIMPHNAWKPENHTNHNRNNKA--HRNGITKPKKHIFLSIEGSRRQFIKSLRFFRKNNK 62

Query: 418 TQVVKPPSSLRK 383
            Q+ KP  SLRK
Sbjct: 63  RQINKPVESLRK 74


>U13072-6|AAK31399.1|  327|Caenorhabditis elegans Hypothetical
           protein C07D10.1 protein.
          Length = 327

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = -3

Query: 168 RTPEVFRKWSTRK*GLNELYYRWLPCKLTNQSNAKLV*LKIADSKDK 28
           R   V  KW++    LNE   ++ PC L  + NAK   + + + K +
Sbjct: 27  RCRRVCTKWNSEILRLNEYTSKFTPCSLMMEINAKKFKISLGNLKSR 73


>AL117195-20|CAB60768.1|  388|Caenorhabditis elegans Hypothetical
           protein Y57A10A.27 protein.
          Length = 388

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +3

Query: 369 SGIVPFRNEDGGLTTCVDTLYLKNRTENPRSIL 467
           S ++ FRNEDG L  C++   LK+ TE    +L
Sbjct: 203 SRVLSFRNEDGFLRMCIEK--LKSNTEIVEHVL 233


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,243,484
Number of Sequences: 27780
Number of extensions: 347685
Number of successful extensions: 727
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 727
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)