Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0117.Seq
         (755 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            24   1.8  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   5.4  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   5.4  

>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -3

Query: 444 YDFSGRACPHKLSNRHPRCEKVRY 373
           Y+F     P+ + N HPRC    Y
Sbjct: 138 YNFDYPQVPYTVKNFHPRCAVNNY 161


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 13/39 (33%), Positives = 17/39 (43%), Gaps = 4/39 (10%)
 Frame = -3

Query: 174 KHRTPEVFRKWSTRK*GLNELYY----RWLPCKLTNQSN 70
           KH  PE    + T   GLN  Y+     + P  L+N  N
Sbjct: 211 KHNVPEQRLNYFTEDVGLNHFYFMLNHNYPPFMLSNSLN 249


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 13/39 (33%), Positives = 17/39 (43%), Gaps = 4/39 (10%)
 Frame = -3

Query: 174 KHRTPEVFRKWSTRK*GLNELYY----RWLPCKLTNQSN 70
           KH  PE    + T   GLN  Y+     + P  L+N  N
Sbjct: 211 KHNVPEQRLNYFTEDVGLNHFYFMLNHNYPPFMLSNSLN 249


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,226
Number of Sequences: 438
Number of extensions: 4190
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23753925
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)