BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= pg--0116X.Seq (409 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 25 3.4 SPCC1919.02 |||pig-X|Schizosaccharomyces pombe|chr 3|||Manual 25 6.0 >SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces pombe|chr 1|||Manual Length = 4924 Score = 25.4 bits (53), Expect = 3.4 Identities = 9/16 (56%), Positives = 11/16 (68%) Frame = +1 Query: 94 KRNTLFCVHCALYDAY 141 K LFC+H LYDA+ Sbjct: 1441 KNYVLFCIHHVLYDAW 1456 >SPCC1919.02 |||pig-X|Schizosaccharomyces pombe|chr 3|||Manual Length = 332 Score = 24.6 bits (51), Expect = 6.0 Identities = 9/18 (50%), Positives = 12/18 (66%) Frame = +1 Query: 229 IQNDPTTIRLSFPTGSRS 282 +QNDPTT+ +S P S Sbjct: 282 LQNDPTTLSISIPIADLS 299 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,438,948 Number of Sequences: 5004 Number of extensions: 25526 Number of successful extensions: 62 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 62 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 62 length of database: 2,362,478 effective HSP length: 66 effective length of database: 2,032,214 effective search space used: 140222766 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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