Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0116X.Seq
         (409 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0642 - 19525774-19526554,19526657-19527075                       27   7.6  
06_01_0958 - 7380021-7380401,7380771-7381046,7381184-7381582           27   7.6  
04_01_0414 - 5487688-5488004,5488179-5488382,5488895-5489210           27   7.6  

>10_08_0642 - 19525774-19526554,19526657-19527075
          Length = 399

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 254 ASHFPLDRGRVVFERRNDVTFPL 322
           A  FPL RG  V+  RND+ + L
Sbjct: 252 AQDFPLIRGNCVYYARNDILYSL 274


>06_01_0958 - 7380021-7380401,7380771-7381046,7381184-7381582
          Length = 351

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = +2

Query: 179 IKPTSHYYYGEAFMKILFRTTQPRSASHFPLDRGRVVF 292
           ++P    Y+GE  +  LF     R A H   ++G+  F
Sbjct: 299 LQPLIASYFGEDILNALFEEYAHRVAKHLEKEKGKFAF 336


>04_01_0414 - 5487688-5488004,5488179-5488382,5488895-5489210
          Length = 278

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 243 NHDPPLISHWIEVVLFLNVVMTSPSL 320
           NH+PP   H +  VL L +V+  P L
Sbjct: 35  NHEPPAPEHLLSSVLPLGLVLPPPGL 60


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,930,071
Number of Sequences: 37544
Number of extensions: 183211
Number of successful extensions: 415
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 415
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 718652880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)