Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0116X.Seq
         (409 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19001| Best HMM Match : MBOAT (HMM E-Value=2.2)                     34   0.039
SB_57269| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.36 
SB_36072| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.63 
SB_17384| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     30   0.84 
SB_36275| Best HMM Match : Extensin_2 (HMM E-Value=0.062)              29   1.9  
SB_9843| Best HMM Match : LIM (HMM E-Value=8.4e-07)                    28   3.4  
SB_40990| Best HMM Match : PSRT (HMM E-Value=7.7)                      27   4.5  
SB_23233| Best HMM Match : Mucin (HMM E-Value=2.1)                     27   4.5  
SB_20744| Best HMM Match : CH (HMM E-Value=0.92)                       27   4.5  
SB_26242| Best HMM Match : Pkinase_Tyr (HMM E-Value=2.8e-15)           27   7.8  
SB_56398| Best HMM Match : E-MAP-115 (HMM E-Value=0.53)                27   7.8  
SB_40655| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.8  
SB_2130| Best HMM Match : fn2 (HMM E-Value=2.7e-15)                    27   7.8  

>SB_19001| Best HMM Match : MBOAT (HMM E-Value=2.2)
          Length = 596

 Score = 34.3 bits (75), Expect = 0.039
 Identities = 19/51 (37%), Positives = 27/51 (52%)
 Frame = +2

Query: 113 VYTARCTTHTLCRTIPLKAHS*IKPTSHYYYGEAFMKILFRTTQPRSASHF 265
           ++  R    TL  T P   +  + PTS Y+   A++KIL+R   PRS S F
Sbjct: 333 LHLLRLPQSTLSFT-PTSEYFIVTPTSEYFIFYAYLKILYRLRLPRSTSSF 382



 Score = 33.1 bits (72), Expect = 0.090
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = +2

Query: 179 IKPTSHYYYGEAFMKILFRTTQPRSASHF 265
           + PTS Y+   A++KIL+R   PRS S F
Sbjct: 195 LTPTSEYFIFYAYLKILYRLRLPRSTSSF 223



 Score = 26.6 bits (56), Expect = 7.8
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +2

Query: 146 CRTIPLKAHS*IKPTSHYYYGEAFMKILFRTTQPRSASHF 265
           C  +P    S   PTS Y+   A++ +L R   P+S S F
Sbjct: 540 CLRLPRSTSS-STPTSKYFIVYAYLGVLHRLRLPQSTSSF 578


>SB_57269| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 118

 Score = 31.1 bits (67), Expect = 0.36
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = +1

Query: 1   GADSYPYCPYCDTRTGHRRTDLLHTDNTTRTKRNTLFCVHCALYDAYLVSYNPA 162
           G  S PY PYCDT+  +++ D    D+   T   T  C+      +Y++ Y  A
Sbjct: 23  GQPSQPYQPYCDTKYYYQKIDRTGCDS---TYAGTYVCI--GTCQSYVIPYESA 71


>SB_36072| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 498

 Score = 30.3 bits (65), Expect = 0.63
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +1

Query: 37  TRTGHRRTDLLHTDNTTRTKRNTLFCVHCALYDAYLVSYN 156
           TR  H     LH  +TTR   NTL  +H A +     ++N
Sbjct: 380 TRYSHYTLLTLHATHTTRYSHNTLLTLHAATHTTRYTTHN 419



 Score = 27.5 bits (58), Expect = 4.5
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +2

Query: 65  YSTLTTQHAQNATPCFVYTARCTTHT 142
           +STL T HA + T    +T R TTHT
Sbjct: 217 HSTLRTPHATHTTHYPSHTTRYTTHT 242


>SB_17384| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 425

 Score = 29.9 bits (64), Expect = 0.84
 Identities = 16/41 (39%), Positives = 17/41 (41%)
 Frame = +1

Query: 22  CPYCDTRTGHRRTDLLHTDNTTRTKRNTLFCVHCALYDAYL 144
           C YCD       T L H    T  K  +  CVHC    AYL
Sbjct: 375 CKYCDRSFSQSSTVLRHM--RTHDKDKSYRCVHCGQVFAYL 413


>SB_36275| Best HMM Match : Extensin_2 (HMM E-Value=0.062)
          Length = 406

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +2

Query: 65  YSTLTTQHAQNATPCFVYTARCTTHTLCRTIPLKAHS*IKPTSHYYY 205
           YS  T +H   + P + + +  ++H     +PL  H+ I PT H  Y
Sbjct: 306 YSYPTYKHPSYSYPSYKHPSYPSSHIQASLLPLIPHTSIPPTPHPTY 352


>SB_9843| Best HMM Match : LIM (HMM E-Value=8.4e-07)
          Length = 2128

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = -3

Query: 383  QSGDRRRAGRSPXWRLRDVTLEGR*RHYDVQKQHDLDPVGNER 255
            + G R   G     R RD +  GR R YD ++ HD+ P G+ R
Sbjct: 1700 RGGPRDERGPRRDERPRDDSDRGR-RDYDPRRPHDIRPDGDRR 1741


>SB_40990| Best HMM Match : PSRT (HMM E-Value=7.7)
          Length = 70

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 19  YCPYCDTRTGHRRTDLLHTDNTTRTKRNTL 108
           YC YC + T +RR D L    + R KR ++
Sbjct: 21  YCRYCPSNTRNRR-DSLEPSESARVKRKSV 49


>SB_23233| Best HMM Match : Mucin (HMM E-Value=2.1)
          Length = 350

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 19  YCPYCDTRTGHRRTDLLHTDNTTRTKRNTL 108
           YC YC + T +RR D L    + R KR ++
Sbjct: 301 YCRYCPSNTRNRR-DSLEPSESARVKRKSV 329


>SB_20744| Best HMM Match : CH (HMM E-Value=0.92)
          Length = 1103

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 19  YCPYCDTRTGHRRTDLLHTDNTTRTKRNTL 108
           YC YC + T +RR D L    + R KR ++
Sbjct: 63  YCRYCPSNTRNRR-DSLEPSESARVKRKSV 91


>SB_26242| Best HMM Match : Pkinase_Tyr (HMM E-Value=2.8e-15)
          Length = 1019

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -3

Query: 392 GMSQSGDRRRAGRSPXWRLRDVTLEGR 312
           GMS+     RAG+SP  +L+++T+  R
Sbjct: 712 GMSRGRRHGRAGKSPLSQLKEITIHER 738


>SB_56398| Best HMM Match : E-MAP-115 (HMM E-Value=0.53)
          Length = 502

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -3

Query: 392 GMSQSGDRRRAGRSPXWRLRDVTLEGR 312
           GMS+     RAG+SP  +L+++T+  R
Sbjct: 440 GMSRGRRHGRAGKSPLSQLKEITIHER 466


>SB_40655| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1074

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = +1

Query: 337 SRHXGDRPARRRSPLCDIP 393
           S   GDRP+RRRS  CD+P
Sbjct: 7   SPRTGDRPSRRRS--CDLP 23


>SB_2130| Best HMM Match : fn2 (HMM E-Value=2.7e-15)
          Length = 430

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 16/47 (34%), Positives = 20/47 (42%)
 Frame = +2

Query: 155 IPLKAHS*IKPTSHYYYGEAFMKILFRTTQPRSASHFPLDRGRVVFE 295
           IP    S +KP  +Y YG+ F           +A    LD G VV E
Sbjct: 9   IPFTLLSNLKPQGYYVYGKVFELKFLMPKATGTAPKGTLDNGDVVKE 55


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,653,062
Number of Sequences: 59808
Number of extensions: 229757
Number of successful extensions: 485
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 480
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 740151420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)