Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0116X.Seq
         (409 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82275-1|CAB05237.2|  472|Caenorhabditis elegans Hypothetical pr...    28   3.0  
Z46934-12|CAA87044.3|  539|Caenorhabditis elegans Hypothetical p...    28   3.0  
U41015-1|AAA82317.2| 1396|Caenorhabditis elegans Multidrug resis...    27   5.2  
AF036705-6|AAB95173.1|  119|Caenorhabditis elegans Hypothetical ...    26   9.1  

>Z82275-1|CAB05237.2|  472|Caenorhabditis elegans Hypothetical
           protein K01G12.3 protein.
          Length = 472

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +3

Query: 234 ERPNHDPPLISHWIEVVLFLNVVMTS 311
           ERPNHD      W+++++  ++V+ S
Sbjct: 245 ERPNHDEAEFEFWLDLMIAQHIVLLS 270


>Z46934-12|CAA87044.3|  539|Caenorhabditis elegans Hypothetical
           protein ZK1320.6 protein.
          Length = 539

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 6/51 (11%)
 Frame = +1

Query: 19  YCPYCDTRTGHRRTDLLHTDNTTRTKRNTLF------CVHCALYDAYLVSY 153
           YC  CD+    R ++  H+ N     R           VHC L+ +Y+V +
Sbjct: 119 YCTVCDSNLCERCSESTHSTNVLSKHRRIPLTEKPPPLVHCRLHSSYVVEF 169


>U41015-1|AAA82317.2| 1396|Caenorhabditis elegans Multidrug resistance
            protein familyprotein 6 protein.
          Length = 1396

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = +1

Query: 58   TDLLHTDNTTRT--KRNTLFCVHCALYDAYLVSYN 156
            T  +H  +T R   K N +    CAL+D Y+ +YN
Sbjct: 994  TSTVHGLSTIRAYRKENEMIEKFCALHDVYMAAYN 1028


>AF036705-6|AAB95173.1|  119|Caenorhabditis elegans Hypothetical
           protein F37C4.7 protein.
          Length = 119

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +3

Query: 222 KFYSERPNHDPPLISHWIEVVLFLNVVM 305
           K   +RPN D     HW  ++L L++ +
Sbjct: 78  KTKQKRPNEDRKQDDHWFSIILILSLAL 105


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,162,296
Number of Sequences: 27780
Number of extensions: 148272
Number of successful extensions: 303
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 302
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 651753158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)