Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0116X.Seq
         (409 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    23   1.8  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   1.8  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    20   9.4  

>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +3

Query: 105 PVLCTLRVVRRIPCVVQSR*KHI 173
           P+L  L V  RI CV+ SR +++
Sbjct: 210 PMLVMLYVYGRISCVIASRHRNL 232



 Score = 20.2 bits (40), Expect = 9.4
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +2

Query: 59  LIYSTLTTQHAQNATPCFV 115
           +I + +TT+  ++ T CFV
Sbjct: 58  VIAAVITTRRLRSVTNCFV 76


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +1

Query: 235 NDPTTIRLSFPTGSRS 282
           NDPTT+ L+  T +RS
Sbjct: 894 NDPTTVSLAVDTVARS 909


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 7/23 (30%), Positives = 11/23 (47%)
 Frame = -3

Query: 404 PSTNGMSQSGDRRRAGRSPXWRL 336
           P+  G+    DRR+   +  W L
Sbjct: 196 PNDEGIETDSDRRKGSIARCWSL 218


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,305
Number of Sequences: 438
Number of extensions: 1800
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10256061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)