Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0114.Seq
         (575 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein L5|Sch...    29   0.37 
SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein L5|Schizo...    29   0.37 
SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1...    26   3.4  
SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces pom...    26   3.4  
SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr...    26   4.5  
SPBC1105.07c |||nuclear pore associated protein Thp1-Sac3 comple...    25   7.9  
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    25   7.9  

>SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 294

 Score = 29.5 bits (63), Expect = 0.37
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +2

Query: 47  DRVWHRALLSKLPSYGIPEGLCKWIASFLDG 139
           D V   A  S+LP YGI  GL  W A++  G
Sbjct: 72  DYVLAHAHSSELPRYGIKWGLANWTAAYATG 102


>SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score = 29.5 bits (63), Expect = 0.37
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +2

Query: 47  DRVWHRALLSKLPSYGIPEGLCKWIASFLDG 139
           D V   A  S+LP YGI  GL  W A++  G
Sbjct: 72  DYVLAHAHSSELPRYGIKWGLANWTAAYATG 102


>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1004

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = +2

Query: 86  SYGIPEGLCKWIASF--LDGRSVTVVVDGDCSDTMTINADRSTRFGALP 226
           S  IP  LC   + F  +  ++VT  V     DT+++N+  S  FG  P
Sbjct: 423 SLSIPPSLCFLASDFRVIAFQTVTKKVWNQIEDTISVNSHYSCLFGGSP 471


>SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 659

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +3

Query: 453 FARSLRRRTPLSWRRNSKDIPAT 521
           F  SLRR +P  W   +KDI  T
Sbjct: 404 FVASLRRDSPSQWMSTAKDIALT 426


>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = -2

Query: 481 GVLLRSERANLCLYRVELNQVQFTPFGDS 395
           G+L++ ER NL  YRV L   QF P  DS
Sbjct: 688 GILIKPERYNLFKYRVYL--PQFLPPTDS 714


>SPBC1105.07c |||nuclear pore associated protein Thp1-Sac3 complex
           subunit |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 442

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 12/43 (27%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +2

Query: 323 QSLSRSMVQERR--SKLVSEVENSXGRVSEWGELNLVQFNPIK 445
           Q LS+++  +R+  +KL   ++   GR+  W EL    F  ++
Sbjct: 36  QQLSKTLFLDRKGKNKLNGTIQKEFGRIRGWKELVTTYFEYVE 78


>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1142

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -2

Query: 265 NRQQSLIYRMKSVGESTEPCG 203
           N+    +YR KSV ES EP G
Sbjct: 134 NKYSLYLYREKSVEESDEPSG 154


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,576,019
Number of Sequences: 5004
Number of extensions: 54586
Number of successful extensions: 152
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)